ICEberg
I. Information of ICE
ICEberg ID378
Name ICESdy12394-1 This is a putative ICE identified in this study by Blast
FamilyICESa2603
OrganismStreptococcus dysgalactiae subsp. equisimilis ATCC 12394
Size (bp)50568
GC content [Genome] (%)38.5[39.5]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP002215 (complete ICE sequence in this genome)
Replicon[CP002215]
Genome coordinates886112..936679 
Putative oriT region -
Putative relaxase coordinates: 932681..934546; Locus tag: SDE12394_04825;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of ICESdy12394-1 is not available.



The graph information of ICESdy12394-1 components from CP002215
Complete gene list of ICESdy12394-1 from CP002215
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SDE12394_04550881309..883408 [-], 2100ATP-dependent protease ATP-binding subunit ClpL
2rplJ884816..885313 [+], 49850S ribosomal protein L10
3rplL885378..885743 [+], 36650S ribosomal protein L7/L12
4SDE12394_04565885942..886115 [+], 174hypothetical protein
5SDE12394_04570886112..886930 [+], 819hypothetical protein
6SDE12394_04575886932..887027 [+], 96hypothetical protein
7SDE12394_04580887079..888434 [+], 1356C-5 cytosine-specific DNA methylase
8SDE12394_04585888418..888846 [+], 429hypothetical protein
9SDE12394_04590888857..889240 [+], 384hypothetical protein
10SDE12394_04595889249..889482 [+], 234hypothetical protein
11SDE12394_04600889581..890069 [+], 489protease, putative
12SDE12394_04605890146..890634 [+], 489hypothetical protein
13SDE12394_04610890634..892451 [+], 1818Type IV secretory pathway, VirD4 componentT4CP 
14SDE12394_04615892469..892711 [+], 243hypothetical protein
15SDE12394_04620892730..893584 [+], 855hypothetical protein
16SDE12394_04625893646..893999 [+], 354hypothetical protein
17SDE12394_04640896310..899111 [+], 2802hypothetical proteinPrgK, T4SS component 
18SDE12394_04645899197..900042 [-], 846abortive infection protein AbiGII
19SDE12394_04650900039..900629 [-], 591abortive infection protein AbiGI
20SDE12394_04655900908..905803 [+], 4896agglutinin receptorPrgB, T4SS component 
21SDE12394_04660905804..905995 [+], 192calcium-binding protein, putative
22SDE12394_04665905979..906530 [+], 552hypothetical protein
23SDE12394_04670906579..913403 [+], 6825SNF2 family protein
24SDE12394_04675913474..913773 [+], 300hypothetical protein
25SDE12394_04680913787..914077 [+], 291hypothetical protein
26SDE12394_04685914173..914811 [+], 639hypothetical protein
27SDE12394_04690914850..915926 [+], 1077hypothetical protein
28SDE12394_04695915980..916207 [+], 228hypothetical protein
29SDE12394_04700916204..916593 [+], 390hypothetical protein
30SDE12394_04705916643..916939 [+], 297hypothetical protein
31SDE12394_04710916948..917256 [-], 309hypothetical protein
32SDE12394_04715917243..917593 [-], 351hypothetical protein
33SDE12394_04720917590..919005 [-], 1416ImpB/MucB/SamB family protein
34SDE12394_04725919011..919145 [-], 135hypothetical protein
35SDE12394_04730919148..919840 [-], 693repressor protein, putative
36SDE12394_04735920024..920350 [-], 327hypothetical protein
37SDE12394_04740920384..920842 [-], 459hypothetical protein
38SDE12394_04745921381..922001 [+], 621cadmium resistance transporter, putative
39SDE12394_04750922426..922872 [+], 447transcriptional repressor CopY, putative
40SDE12394_04755922859..923335 [+], 477hypothetical protein
41SDE12394_04760923483..923689 [+], 207putative copper-chaperone/transport protein
42SDE12394_04765923828..925915 [+], 2088cation transporter E1-E2 family ATPase
43SDE12394_04770926089..926685 [-], 597hypothetical protein
44SDE12394_04775926694..927482 [+], 789hypothetical protein
45SDE12394_04780927536..927835 [-], 300hypothetical protein
46SDE12394_04785928038..928406 [+], 369cadmium efflux system accessory protein
47SDE12394_04800930804..931022 [-], 219transposase
48SDE12394_04805930986..931387 [-], 402hypothetical protein
49SDE12394_04810931529..931636 [-], 108hypothetical protein
50SDE12394_04815931960..932322 [+], 363hypothetical protein
51SDE12394_04820932329..932694 [+], 366hypothetical protein
52SDE12394_04825932681..934546 [+], 1866Tn5252, relaxaseRelaxase, MOBP Family
53SDE12394_04830934727..934951 [+], 225Cro/CI family transcriptional regulator
54SDE12394_04835935230..935457 [+], 228hypothetical protein
55SDE12394_04840935480..936679 [+], 1200phage integrase family site specific recombinaseIntegrase 
56SDE12394_04845936967..938214 [+], 1248putative D,D-carboxypeptidase, penicillin-binding protein
57SDE12394_04850938305..939267 [-], 963polysaccharide deacetylase
58SDE12394_04855939451..940737 [+], 1287homoserine dehydrogenase
59SDE12394_04860940739..941599 [+], 861homoserine kinase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins51Fasta
Identified as part of this study from CP002215