ICEberg
I. Information of ICE
ICEberg ID376
Name ICEEfaV583-1 This is a predicted ICE derived from literature
FamilyUnclassified
OrganismEnterococcus faecalis V583
Size (bp)54255
GC content [Genome] (%)52.76[37.53]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAE016830 (complete ICE sequence in this genome)
Replicon chromosome (3218031 bp, BioProject:70) [NC_004668]
Genome coordinates2204066..2258320 
Putative oriT region -
Putative relaxase coordinates: 2220066..2221478; Locus tag: EF_2303;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of ICEEfaV583-1 is not available.



The graph information of ICEEfaV583-1 components from AE016830
Complete gene list of ICEEfaV583-1 from AE016830
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1EF_22802201166..2203613 [-], 2448conserved hypothetical protein
2EF_22812203600..2203989 [-], 390conserved hypothetical protein
3EF_22822204066..2204680 [+], 615conserved domain protein
4EF_22832204960..2206573 [-], 1614site-specific recombinase, resolvase family, putativeIntegrase 
5EF_22842206701..2206877 [-], 177hypothetical protein
6EF_22852206945..2207805 [-], 861hypothetical protein
7EF_22862207802..2209013 [-], 1212ParB-like nuclease domain protein
8EF_22872209172..2209732 [+], 561hypothetical protein
9EF_22882209998..2210117 [+], 120hypothetical protein
10EF_22892210145..2210591 [-], 447hypothetical protein
11EF_22902210747..2211127 [-], 381RNA polymerase sigma-70 factor, ECF subfamily
12EF_22912211601..2211966 [+], 366transcriptional regulator, Cro/CI family
13EF_22922211933..2212277 [-], 345hypothetical protein
14vanX2212353..2212961 [-], 609D-alanyl-D-alanine dipeptidase
15vanB2212967..2213995 [-], 1029D-alanine--D-lactate ligase
16EF_22952213988..2214959 [-], 972D-specific alpha-keto acid dehydrogenase
17vanW2214956..2215783 [-], 828vancomycin B-type resistance protein VanW
18vanYB2215801..2216607 [-], 807D-alanyl-D-alanine carboxypeptidase
19vanSB2216783..2218126 [-], 1344sensor histidine kinase VanSB
20vanRB2218126..2218788 [-], 663DNA-binding response regulator VanRB
21EF_23002218843..2219031 [-], 189streptomycin resistance protein, putative
22EF_23022219565..2219783 [-], 219conserved hypothetical protein
23EF_23032220066..2221478 [-], 1413conserved hypothetical proteinRelaxase, MOBP Family
24EF_23042221559..2221834 [+], 276transcriptional regulator, Cro/CI family
25EF_23052221837..2222787 [-], 951toprim domain protein
26EF_23062222854..2223192 [-], 339conserved hypothetical protein
27EF_23072223189..2232710 [-], 9522conserved hypothetical protein
28EF_23082232905..2233006 [-], 102hypothetical protein
29EF_23092233047..2233265 [-], 219hypothetical protein
30EF_23102233538..2233987 [-], 450hypothetical protein
31EF_23112233984..2234145 [-], 162hypothetical protein
32topB-22234375..2236492 [-], 2118DNA topoisomerase III
33EF_23132236443..2236670 [-], 228hypothetical protein
34EF_23142236670..2237956 [-], 1287bacteriocin, putative
35EF_23152238911..2239159 [-], 249hypothetical protein
36EF_23162239156..2240004 [-], 849conserved domain protein
37EF_23172239989..2240090 [+], 102hypothetical protein
38EF_23182240101..2242878 [-], 2778peptidase, M23/M37 familyOrf14_Tn, T4SS component 
39EF_23192242875..2243990 [-], 1116hypothetical protein
40EF_23202244004..2246481 [-], 2478traE protein, putativePrgJ, T4SS component 
41EF_23212246405..2246824 [-], 420hypothetical protein
42EF_23222246825..2248129 [-], 1305conserved domain protein
43EF_23242248728..2249597 [-], 870conserved hypothetical protein
44EF_23252249591..2249782 [-], 192hypothetical protein
45EF_23262249859..2251745 [-], 1887group II intron reverse transcriptase maturase
46EF_23272252465..2252596 [-], 132hypothetical protein
47EF_23282252661..2254436 [-], 1776TraG family proteinT4CP 
48EF_23292254433..2254912 [-], 480hypothetical protein
49EF_23302254941..2255447 [-], 507hypothetical protein
50EF_23312255485..2255916 [-], 432hypothetical protein
51EF_23322255995..2256852 [-], 858conserved domain protein
52EF_23332256825..2257283 [-], 459hypothetical protein
53EF_23342257334..2258320 [-], 987conserved domain protein
54EF_23352258996..2259496 [-], 501conserved hypothetical protein
55EF_23362259509..2259730 [-], 222conserved hypothetical protein
56EF_23372259735..2259872 [-], 138hypothetical protein
57EF_23382259869..2261053 [-], 1185transcriptional regulator, Cro/CI family
58EF_23392261311..2261565 [-], 255hypothetical protein
59EF_23402261591..2262586 [-], 996C-5 cytosine-specific DNA methylase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins51Fasta
(1) Paulsen IT; Banerjei L; Myers GS; Nelson KE; Seshadri R; Read TD; Fouts DE; Eisen JA; Gill SR; Heidelberg JF; Tettelin H; Dodson RJ; Umayam L; Brinkac L; Beanan M; Daugherty S; DeBoy RT; Durkin S; Kolonay J; Madupu R; Nelson W; Vamathevan J; Tran B; Upton J; Hansen T; Shetty J; Khouri H; Utterback T; Radune D; Ketchum KA; Dougherty BA; Fraser CM (2003). Role of mobile DNA in the evolution of vancomycin-resistant Enterococcus faecalis. Science. 299(5615):2071-4. [PudMed:12663927]