ICEberg
I. Information of ICE
ICEberg ID373
Name ICESpn6706B-1 This is a putative ICE identified in this study by Blast
FamilyTn5253
OrganismStreptococcus pneumoniae 670-6B
Size (bp)80874
GC content [Genome] (%)34.48[39.59]
Insertion siteGTP-binding protein gene
FunctionTetracycline resistance
Species that ICE can be transferred to-
Nucleotide SequenceCP002176 (complete ICE sequence in this genome)
Replicon[NC_014498]
Genome coordinates1039483..1120356 
Putative oriT region -
Putative relaxase coordinates: 1087155..1088573; Locus tag: SP670_1167;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICESpn6706B-1 is not available.



The graph information of ICESpn6706B-1 components from CP002176
Complete gene list of ICESpn6706B-1 from CP002176
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SP670_11131034665..1035735 [-], 1071tyrosine recombinase XerC
2SP670_11141036319..1037869 [-], 1551voltage-gated chloride channel family protein
3SP670_11151037885..1038664 [-], 780ribonuclease HII
4SP670_11161038651..1039502 [-], 852GTP-binding protein
5SP670_11171039584..1041092 [-], 1509integrase
6SP670_11181041680..1041904 [-], 225conserved domain protein
7SP670_11191042008..1043837 [-], 1830relaxase
8SP670_11201043824..1044189 [-], 366bacterial mobilization protein
9SP670_11211044194..1044550 [-], 357conserved hypothetical protein
10SP670_11221044909..1046084 [+], 1176Abi-alpha protein, putative
11SP670_11231046170..1047987 [-], 1818UvrD/REP helicase family protein
12SP670_11241047974..1050043 [-], 2070Yga2G
13SP670_11251050694..1051266 [+], 573hypothetical protein
14SP670_11261051263..1052513 [-], 1251conserved hypothetical protein
15SP670_11271052607..1053503 [+], 897tyrosine recombinaseIntegrase 
16SP670_11281053880..1054260 [-], 381zeta toxin superfamily
17SP670_11291054321..1054500 [+], 180conserved domain protein
18SP670_11301054621..1054848 [-], 228hypothetical protein
19SP670_11311054839..1055471 [-], 633hypothetical protein
20SP670_11321055553..1055828 [-], 276conserved hypothetical protein
21SP670_11331055866..1056249 [-], 384conserved hypothetical protein
22SP670_11341056246..1056479 [-], 234conserved hypothetical protein
23SP670_11351056530..1057615 [-], 1086conserved hypothetical protein
24SP670_11361057625..1058266 [-], 642conserved hypothetical proteinPrgL, T4SS component 
25SP670_11371058594..1058968 [-], 375choline transport ATP-binding protein opuBA
26SP670_11381059308..1060153 [+], 846replication protein
27SP670_11391061018..1061668 [-], 651chloramphenicol O-acetyltransferase
28SP670_11401061839..1062087 [-], 249hypothetical protein
29SP670_11411062335..1063141 [-], 807hypothetical protein
30SP670_11421063602..1064372 [-], 771zeta toxin
31SP670_11431064372..1064848 [-], 477helix-turn-helix domain protein
32SP670_11441064919..1065191 [-], 273conserved hypothetical protein
33SP670_11451065229..1065612 [-], 384conserved hypothetical protein
34SP670_11461065609..1065842 [-], 234conserved hypothetical protein
35SP670_11471065893..1066978 [-], 1086PcfD
36SP670_11481066988..1067629 [-], 642conserved hypothetical proteinPrgL, T4SS component 
37SP670_11491068804..1069688 [+], 885positive transcriptional regulator MutR family
38SP670_11501069651..1070331 [-], 681hypothetical protein
39SP670_11511070508..1071593 [-], 1086integrase
40SP670_11521071643..1071771 [+], 129hypothetical protein
41SP670_11531071807..1072010 [-], 204conserved domain protein
42SP670_11541072698..1073120 [-], 423sigma-70, region 4 family
43SP670_11551073153..1073269 [+], 117hypothetical protein
44SP670_11561073625..1073978 [+], 354transcriptional regulator, putative
45SP670_11571074324..1076243 [-], 1920TetM protein
46SP670_11581076620..1077537 [-], 918conjugative transposon proteinOrf13_Tn, T4SS component 
47SP670_11591077552..1078553 [-], 1002NLP/P60 family proteinOrf14_Tn, T4SS component 
48SP670_11601078550..1080661 [-], 2112conjugative transposon membrane proteinOrf15_Tn, T4SS component 
49SP670_11611080730..1083177 [-], 2448conjugative transposon proteinOrf16_Tn, T4SS component 
50SP670_11621083161..1083391 [-], 231conjugative transposon membrane proteinOrf17_Tn, T4SS component 
51SP670_11631083642..1084139 [-], 498conjugative transposon protein
52SP670_11641084256..1084477 [-], 222conserved domain proteinOrf19_Tn, T4SS component 
53SP670_11651084657..1085904 [+], 1248transposase
54SP670_11661086161..1086898 [-], 738rRNA adenine N-6-methyltransferase
55SP670_11671087155..1088573 [-], 1419transcriptional regulator, Cro/CI familyRelaxase, MOBT Family
56SP670_11681088751..1090136 [-], 1386ftsk/spoiiie family proteinOrf21_Tn, T4SS component 
57SP670_11691090165..1090548 [-], 384conjugative transposon protein
58SP670_11701090567..1090881 [-], 315conjugative transposon protein
59SP670_11711091197..1091703 [-], 507Zn-dependent protease of MPP family, putative
60SP670_11721091696..1092817 [-], 1122ThiF family protein
61SP670_11731092976..1093089 [-], 114hypothetical protein
62SP670_11741093079..1094662 [-], 1584ABC-type multidrug/protein/lipid transport system
63SP670_11751095054..1095350 [-], 297conserved hypothetical protein
64SP670_11761095364..1095648 [-], 285conserved hypothetical protein
65SP670_11771095723..1101947 [-], 6225SNF2 family protein
66SP670_11781101995..1102405 [-], 411OmpA domain protein
67SP670_11791102549..1102812 [+], 264hypothetical protein
68SP670_11801102868..1103032 [+], 165hypothetical protein
69SP670_11811103034..1103642 [+], 609conserved hypothetical protein
70SP670_11821103677..1106490 [-], 2814conserved hypothetical proteinPrgK, T4SS component 
71SP670_11831106502..1108817 [-], 2316conserved hypothetical proteinPrgJ, T4SS component 
72SP670_11841108810..1109169 [-], 360conserved hypothetical protein
73SP670_11851109223..1110077 [-], 855membrane protein, putativePrgH, T4SS component 
74SP670_11861110094..1110336 [-], 243conserved hypothetical protein
75SP670_11871110357..1112234 [-], 1878TraG/TraD family protein
76SP670_11881112234..1112722 [-], 489conserved hypothetical protein
77SP670_11891112712..1113011 [-], 300conserved hypothetical protein
78SP670_11901113293..1114129 [-], 837abortive infection protein AbiGII, putative
79SP670_11911114129..1114719 [-], 591conserved hypothetical protein
80SP670_11921114847..1115089 [-], 243caax amino protease family
81SP670_11931115144..1115779 [-], 636hypothetical protein
82SP670_11941116071..1116658 [-], 588caax amino protease family
83SP670_11951116661..1116894 [-], 234conserved hypothetical protein
84SP670_11961116907..1117287 [-], 381conserved hypothetical protein
85SP670_11971117280..1117729 [-], 450conserved hypothetical protein
86SP670_11981117713..1118462 [-], 750methyl transferase
87SP670_11991118498..1119007 [-], 510methyl transferase
88SP670_12001119170..1119949 [-], 780replication initiator A domain protein
89SP670_12011119946..1120119 [-], 174conserved hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins85Fasta
Identified as part of this study from CP002176