ICEberg
I. Information of ICE
ICEberg ID372
Name ICESpnP1031-1 This is a putative ICE identified in this study by Blast
FamilyTn5253
OrganismStreptococcus pneumoniae P1031
Size (bp)53040
GC content [Genome] (%)36.34[39.75]
Insertion site-
FunctionTetracycline resistance
Species that ICE can be transferred to-
Nucleotide SequenceCP000920 (complete ICE sequence in this genome)
Replicon chromosome (2111882 bp, BioProject:28041) [NC_012467]
Genome coordinates1064292..1117331 
Putative oriT region -
Putative relaxase coordinates: 1082767..1083972; Locus tag: SPP_1164;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICESpnP1031-1 is not available.



The graph information of ICESpnP1031-1 components from CP000920
Complete gene list of ICESpnP1031-1 from CP000920
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SPP_11421064005..1064190 [-], 186hypothetical protein
2SPP_11431064530..1064703 [+], 174conserved hypothetical protein
3SPP_11441064700..1065479 [+], 780replication initiator protein A (RepA) N-terminus
4SPP_11451065578..1066936 [+], 1359methyl transferase
5SPP_11461066920..1067369 [+], 450conserved hypothetical protein
6SPP_11471067362..1067742 [+], 381conserved hypothetical protein
7SPP_11481067755..1067988 [+], 234conserved hypothetical protein
8SPP_11491068132..1068593 [+], 462caax amino protease family
9SPP_11501068755..1069972 [-], 1218transposase from transposon (Integrase)Integrase 
10SPP_11511070054..1070257 [-], 204conserved domain protein
11SPP_11521070945..1071367 [-], 423sigma-70, region 4 family
12SPP_11531071400..1071516 [+], 117hypothetical protein
13SPP_11541071872..1072225 [+], 354transcriptional regulator, putative
14SPP_11551072571..1074490 [-], 1920tetracycline resistance protein TetM
15SPP_11561074506..1074622 [-], 117Tetracycline resistance determinant leader peptide
16SPP_11571074867..1075784 [-], 918conjugative transposon proteinOrf13_Tn, T4SS component 
17SPP_11581075799..1076800 [-], 1002NLP/P60 family proteinOrf14_Tn, T4SS component 
18SPP_11591076797..1078974 [-], 2178conjugative transposon membrane proteinOrf15_Tn, T4SS component 
19SPP_11601078977..1081424 [-], 2448conjugative transposon proteinOrf16_Tn, T4SS component 
20SPP_11611081408..1081914 [-], 507conjugative transposon membrane proteinOrf17_Tn, T4SS component 
21SPP_11621081889..1082386 [-], 498conjugative transposon protein
22SPP_11631082503..1082724 [-], 222conserved domain proteinOrf19_Tn, T4SS component 
23SPP_11641082767..1083972 [-], 1206transcriptional regulator, Cro/CI familyRelaxase, MOBT Family
24SPP_11651084150..1085535 [-], 1386ftsk/spoiiie family proteinOrf21_Tn, T4SS component 
25SPP_11661085564..1085947 [-], 384conjugative transposon protein
26SPP_11671085966..1086280 [-], 315conjugative transposon protein
27SPP_11681086303..1086422 [-], 120conserved hypothetical protein
28SPP_11691086953..1087252 [+], 300conserved hypothetical protein
29SPP_11701087242..1087730 [+], 489conserved hypothetical protein
30SPP_11711087730..1089607 [+], 1878TraG/TraD family protein
31SPP_11721089628..1089870 [+], 243conserved hypothetical protein
32SPP_11731089887..1090741 [+], 855membrane protein, putativePrgH, T4SS component 
33SPP_11741090795..1091154 [+], 360conserved hypothetical protein
34SPP_11751091147..1093462 [+], 2316conserved hypothetical proteinPrgJ, T4SS component 
35SPP_11761093474..1096287 [+], 2814M23 peptidase domain proteinPrgK, T4SS component 
36SPP_11771096525..1097091 [+], 567conserved hypothetical protein
37SPP_11781097243..1097653 [+], 411Ig domain protein, group 2 domain protein
38SPP_11791097701..1103931 [+], 6231SNF2 family protein
39SPP_11801104006..1104290 [+], 285conserved hypothetical protein
40SPP_11811104304..1104600 [+], 297conserved hypothetical protein
41SPP_11821104614..1104811 [-], 198hypothetical protein
42SPP_11831104971..1105612 [+], 642conserved hypothetical proteinPrgL, T4SS component 
43SPP_11841105622..1106707 [+], 1086DNA primase
44SPP_11851106758..1106991 [+], 234conserved hypothetical protein
45SPP_11861106988..1107371 [+], 384methyl-accepting chemotaxis protein
46SPP_11871107409..1107681 [+], 273ATPases with chaperone activity, ATP-binding subunit
47SPP_11881107751..1108227 [+], 477helix-turn-helix domain protein
48SPP_11891108227..1108997 [+], 771signal recognition particle GTPase
49SPP_11901109225..1109908 [+], 684transcriptional regulator
50SPP_11911109911..1111326 [+], 1416SOS responce UmuC protein
51SPP_11921111326..1111688 [+], 363conserved hypothetical protein
52SPP_11931111678..1111968 [+], 291conserved hypothetical protein
53SPP_11941112264..1112620 [+], 357hypothetical protein
54SPP_11951112763..1112990 [+], 228putative bacterial mobilization protein (MobC)
55SPP_11961112977..1114806 [+], 1830relaxase
56SPP_11971114910..1115134 [+], 225conserved domain protein
57SPP_11981115722..1117230 [+], 1509integrase
58SPP_11991117312..1118163 [+], 852GTP-binding protein
59SPP_12001118150..1118929 [+], 780ribonuclease HII (RNase HII)
60SPP_12011118945..1120495 [+], 1551voltage-gated chloride channel family protein
61SPP_12021120989..1122059 [+], 1071tyrosine recombinase XerC
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins56Fasta
Identified as part of this study from CP000920