ICEberg
I. Information of ICE
ICEberg ID370
Name Tn5252(SP1000) This ICE is derived from experimental literature
FamilyTn5253
OrganismStreptococcus pneumoniae SP1000
Size (bp)-
GC content [Genome] (%)-
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceL29323; L29324 (partial ICE sequence)
Putative oriT region -
Putative relaxase coordinates: 3070..4365; Locus tag: -;  Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of Tn5252(SP1000) is not available.



The graph information of Tn5252(SP1000) components from L29323
Incomplete gene list of Tn5252(SP1000) from L29323
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-71..520 [-], 450unknown
2-504..1862 [-], 1359methyl transferase
3-1289..1807 [-], 519methyl transferase
4-1962..2246 [-], 285unknown


The graph information of Tn5252(SP1000) components from L29324
Incomplete gene list of Tn5252(SP1000) from L29324
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-130..1311 [-], 1182integraseIntegrase 
2-1308..1640 [-], 333unknown
3-1725..1958 [-], 234excisionase
4-2064..2213 [+], 150unknown
5-2215..2442 [-], 228repressor protein
6-2544..2777 [-], 234unknown
7-3070..4365 [-], 1296relaxaseRelaxase, MOBP Family
8-4352..4717 [-], 366unknown
9-4722..5078 [-], 357unknown
10-5373..5663 [-], 291unknown
11-5653..5964 [-], 312unknown
12-6011..7333 [-], 1323UmuC MucB homolog
13-7432..8106 [-], 675UmuD MucA homolog
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences0Fasta
Proteins0Fasta
(1) Munoz-Najar U; Vijayakumar MN (1999). An operon that confers UV resistance by evoking the SOS mutagenic response in streptococcal conjugative transposon Tn5252. J Bacteriol. 181(9):2782-8. [PudMed:10217768] experimental
(2) Sampath J; Vijayakumar MN (1998). Identification of a DNA cytosine methyltransferase gene in conjugative transposon Tn5252. Plasmid. 39(1):63-76. [PudMed:9473447] experimental
(3) Srinivas P; Kilic AO; Vijayakumar MN (1997). Site-specific nicking in vitro at ori T by the DNA relaxase of Tn5252. Plasmid. 37(1):42-50. [PudMed:9073581] experimental
(4) Kilic AO; Vijayakumar MN; al-Khaldi SF (1994). Identification and nucleotide sequence analysis of a transfer-related region in the streptococcal conjugative transposon Tn5252. J Bacteriol. 176(16):5145-50. [PudMed:8051031] experimental
 
experimental experimental literature