ICEberg
I. Information of ICE
ICEberg ID363
Name ICESpnA213 This ICE is derived from experimental literature
FamilyTn5253
OrganismStreptococcus pneumoniae SpnA213
Size (bp)>67 kb
GC content [Genome] (%)-
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceFM201786 (partial ICE sequence)
Putative oriT region -
Putative relaxase coordinates: 47904..49322; Locus tag: -;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICESpnA213 is not available.



The graph information of ICESpnA213 components from FM201786
Incomplete gene list of ICESpnA213 from FM201786
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-131..1312 [-], 1182hypothetical protein
2-1257..1640 [-], 384hypothetical protein
3-1725..1994 [-], 270hypothetical protein
4-2073..2222 [+], 150hypothetical protein
5-2224..2451 [-], 228hypothetical protein
6-2554..3120 [-], 567hypothetical protein
7-3256..4383 [-], 1128hypothetical protein
8-4370..4735 [-], 366hypothetical protein
9-4740..5096 [-], 357hypothetical protein
10-5391..5681 [-], 291hypothetical protein
11-5671..6033 [-], 363hypothetical protein
12-6033..7322 [-], 1290hypothetical protein
13-7453..8136 [-], 684hypothetical protein
14-8400..9158 [-], 759hypothetical protein
15-9158..9634 [-], 477hypothetical protein
16-9910..10554 [-], 645hypothetical protein
17-10640..11233 [-], 594hypothetical protein
18rep11656..12591 [+], 936replication protein
19cat13456..14106 [-], 651chloramphenicol acetyltransferaseAR 
20-14278..14526 [-], 249hypothetical protein
21-14766..15554 [-], 789hypothetical protein
22-16030..16788 [-], 759hypothetical protein
23-16788..17264 [-], 477hypothetical protein
24-17332..17604 [-], 273hypothetical protein
25-17642..18025 [-], 384hypothetical protein
26-18022..18255 [-], 234hypothetical protein
27-18306..19391 [-], 1086hypothetical protein
28-19401..20042 [-], 642hypothetical proteinPrgL, T4SS component 
29-20202..20399 [+], 198hypothetical protein
30-20413..20709 [-], 297hypothetical protein
31-20723..21007 [-], 285hypothetical protein
32-21082..21891 [-], 810hypothetical protein
33-21931..25878 [-], 3948hypothetical protein
34-25895..27313 [-], 1419hypothetical protein
35-27346..27756 [-], 411hypothetical protein
36-28187..28594 [-], 408hypothetical protein
37-28579..29502 [-], 924hypothetical protein
38-29520..30278 [-], 759hypothetical protein
39-30816..31010 [+], 195hypothetical protein
40int-Tn31261..32478 [-], 1218integraseIntegrase 
41xis-Tn32560..32763 [-], 204excisionase
42-32747..32998 [+], 252hypothetical protein
43-33224..33454 [-], 231hypothetical protein
44-33451..33873 [-], 423hypothetical protein
45-34102..34173 [-], 72hypothetical protein
46-34378..34731 [+], 354hypothetical protein
47-34791..34979 [-], 189hypothetical protein
48tetM35076..36995 [-], 1920tetracycline resistance protein TetMAR 
49-37011..37097 [-], 87hypothetical protein
50-37372..38034 [-], 663hypothetical proteinOrf13_Tn, T4SS component 
51-38517..39032 [-], 516hypothetical proteinOrf14_Tn, T4SS component 
52-39299..41410 [-], 2112hypothetical proteinOrf15_Tn, T4SS component 
53-41479..43926 [-], 2448hypothetical proteinOrf16_Tn, T4SS component 
54-43910..44416 [-], 507hypothetical proteinOrf17_Tn, T4SS component 
55-44391..44888 [-], 498hypothetical protein
56-45005..45226 [-], 222hypothetical proteinOrf19_Tn, T4SS component 
57-45406..46653 [+], 1248hypothetical protein
58-46774..46965 [-], 192hypothetical protein
59-46910..47547 [-], 638hypothetical proteinAR 
60-47904..49322 [-], 1419hypothetical proteinRelaxase, MOBT Family
61-49500..50885 [-], 1386hypothetical proteinOrf21_Tn, T4SS component 
62-50914..51300 [-], 387hypothetical protein
63-51316..51630 [-], 315hypothetical protein
64-51653..51772 [-], 120hypothetical protein
65-51946..52155 [-], 210hypothetical protein
66-52197..53435 [-], 1239hypothetical proteinPrgK, T4SS component 
67-53443..54369 [-], 927hypothetical proteinPrgK, T4SS component 
68-54417..55010 [-], 594hypothetical protein
69-55022..56380 [-], 1359putative conjugal transfer proteinPrgJ, T4SS component 
70-56412..57380 [-], 969hypothetical proteinPrgJ, T4SS component 
71-57331..57690 [-], 360hypothetical protein
72-57744..58445 [-], 702hypothetical protein
73-58612..58854 [-], 243hypothetical protein
74-58875..60755 [-], 1881putative conjugal transfer protein TraG
75-60752..61240 [-], 489hypothetical protein
76-61230..61529 [-], 300hypothetical protein
77-61812..62648 [-], 837hypothetical protein
78-62648..63292 [-], 645hypothetical protein
79-63366..63953 [-], 588hypothetical protein
80-63956..64111 [-], 156hypothetical protein
81-64201..64581 [-], 381hypothetical protein
82-64574..65692 [-], 1119putative methyltransferase
83-66228..66512 [-], 285hypothetical protein
84-66624..67007 [-], 384putative replication initiator protein A
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins84Fasta
(1) Mingoia M; Tili E; Manso E; Varaldo PE; Montanari MP (2011). Heterogeneity of Tn5253-like composite elements in clinical Streptococcus pneumoniae isolates. Antimicrob Agents Chemother. 55(4):1453-9. [PudMed:21263055] experimental
 
experimental experimental literature