ICEberg
I. Information of ICE
ICEberg ID362
Name Tn1311 This ICE is derived from experimental literature
FamilyTn5253
OrganismStreptococcus pneumoniae SpnF21
Size (bp)>75 kb
GC content [Genome] (%)-
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceFN667862 (partial ICE sequence)
Putative oriT region -
Putative relaxase coordinates: 41797..43086; Locus tag: -;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of Tn1311 is not available.



The graph information of Tn1311 components from FN667862
Incomplete gene list of Tn1311 from FN667862
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-131..1639 [-], 1509putative integrase
2-1724..1993 [-], 270putative excisionase
3-2227..2451 [-], 225hypothetical protein
4-2555..4147 [-], 1593putative relaxase
5-4371..4736 [-], 366hypotheical protein
6-4741..5037 [-], 297hypothetical protein
7-5549..6631 [+], 1083hypothetical protein
8-6717..8534 [-], 1818putative ATP-dependent DNA helicase
9-8521..10590 [-], 2070putative DNA helicase associated protein
10-11241..11813 [+], 573hypothetical protein
11-11810..13060 [-], 1251hypothetical protein
12-13154..14050 [+], 897hypothetical proteinIntegrase 
13-14427..14798 [-], 372hypothetical protein
14-15313..15540 [-], 228hypothetical protein
15-15531..16166 [-], 636hypothetical protein
16-16245..16520 [-], 276hypothetical protein
17-16558..16941 [-], 384hypothetical protein
18-16938..17171 [-], 234hypothetical protein
19-17222..18307 [-], 1086hypothetical protein
20-18317..18958 [-], 642hypothetical proteinPrgL, T4SS component 
21rep19910..20845 [+], 936replication protein
22cat21710..22360 [-], 651chloramphenicol acetyltransferaseAR 
23-22532..22780 [-], 249hypothetical protein
24-23028..23834 [-], 807hypothetical protein
25-24295..25065 [-], 771hypothetical protein
26-25065..25541 [-], 477putative transcriptional regulator
27-25612..25884 [-], 273hypothetical protein
28-25922..26305 [-], 384hypothetical protein
29-26302..26535 [-], 234hypothetical protein
30-27132..27668 [-], 537hypothetical protein
31-27678..28154 [-], 477hypothetical proteinPrgL, T4SS component 
32-29073..29261 [+], 189hypothetical protein
33-29540..30436 [+], 897hypothetical protein
34-30399..31079 [-], 681hypothetical protein
35int-Tn31256..32473 [-], 1218integrase
36xis-Tn32555..32758 [-], 204excisionase
37-32742..32993 [+], 252hypothetical protein
38-33219..33449 [-], 231hypothetical protein
39-33446..33868 [-], 423hypothetical protein
40-34097..34243 [-], 147hypothetical protein
41-34373..34612 [+], 240hypothetical protein
42tnpA34668..37586 [-], 2919putative transposase
43tnpR37590..38144 [-], 555putative recombinase
44-38363..38554 [-], 192hypothetical protein
45ermB38499..39236 [-], 738erythromycin ribosome methylaseAR 
46-39361..39444 [-], 84MLS leader peptide
47-40125..40634 [-], 510hypothetical protein
48aphA-340910..41704 [-], 795aminoglycoside phosphotransferase type IIIAR 
49-41797..43086 [-], 1290hypothetical proteinRelaxase, MOBT Family
50-43479..44843 [-], 1365hypothetical proteinOrf21_Tn, T4SS component 
51-44892..45278 [-], 387hypothetical protein
52-45294..45608 [-], 315hypothetical protein
53-45631..45750 [-], 120hypothetical protein
54-45924..46430 [-], 507hypothetical protein
55-46605..47543 [-], 939hypothetical protein
56-47805..48950 [-], 1146hypothetical protein
57-49781..50077 [-], 297hypothetical protein
58-50091..50375 [-], 285hypothetical protein
59-50450..51835 [-], 1386hypothetical protein
60-51829..54162 [-], 2334hypothetical protein
61-54134..55717 [-], 1584hypothetical protein
62-55672..56181 [-], 510hypothetical protein
63-56342..56686 [-], 345hypothetical protein
64-56719..57129 [-], 411hypothetical protein
65-57757..58365 [+], 609hypothetical protein
66-58400..59863 [-], 1464putative conjugal transfer proteinPrgK, T4SS component 
67-59812..60543 [-], 732putative conjugal transfer protein
68-60527..61108 [-], 582putative conjugal transfer protein
69-61120..63477 [-], 2358putative conjugal transfer proteinPrgJ, T4SS component 
70-63841..64695 [-], 855hypothetical proteinPrgH, T4SS component 
71-66852..67340 [-], 489putative conjugal transfer protein TraG
72-67330..67629 [-], 300hypothetical protein
73-67911..68747 [-], 837hypothetical protein
74-68747..69391 [-], 645hypothetical protein
75-69465..69707 [-], 243putative caax amino protease family protein
76-69762..70397 [-], 636hypothetical protein
77-70689..71276 [-], 588putative caax amino protease family protein
78-71279..71512 [-], 234hypothetical protein
79-71525..71905 [-], 381hypothetical protein
80-71898..72347 [-], 450hypothetical protein
81-72331..73689 [-], 1359putative DNA methylase
82-73788..74201 [-], 414hypothetical protein
83-74303..74569 [-], 267putative replication initiator protein A
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins83Fasta
(1) Mingoia M; Tili E; Manso E; Varaldo PE; Montanari MP (2011). Heterogeneity of Tn5253-like composite elements in clinical Streptococcus pneumoniae isolates. Antimicrob Agents Chemother. 55(4):1453-9. [PudMed:21263055] experimental
 
experimental experimental literature