ICEberg
I. Information of ICE
ICEberg ID356
Name ICESauST398-4 This is a putative ICE identified in this study by Blast
FamilyICE6013
OrganismStaphylococcus aureus subsp. aureus ST398
Size (bp)13361
GC content [Genome] (%)30.21[32.92]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAM990992 (complete ICE sequence in this genome)
Replicon chromosome (2872582 bp, BioProject:29427) [AM990992]
Genome coordinates2108600..2121960 
Putative oriT region -
Putative relaxase coordinates: 2119572..2120351; Locus tag: SAPIG2042;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICESauST398-4 is not available.



The graph information of ICESauST398-4 components from AM990992
Complete gene list of ICESauST398-4 from AM990992
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SAPIG20252104605..2105717 [-], 1113transposition regulatory protein TnpA
2SAPIG20262105995..2106207 [+], 213conserved hypothetical protein
3SAPIG20272106264..2106437 [-], 174conserved hypothetical protein
4SAPIG20282106888..2107928 [+], 1041acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
5SAPIG20292107985..2108578 [-], 594conserved hypothetical protein
6SAPIG20302108820..2109173 [-], 354transposase InsI for insertion sequence element IS30B/C/DIntegrase 
7SAPIG20312109337..2109840 [-], 504N-region of transposase of
8SAPIG20322109949..2110302 [-], 354lipoprotein, putative
9SAPIG20332110358..2110948 [-], 591conserved hypothetical protein
10SAPIG20342110955..2112001 [-], 1047transfer complex protein TraGPrgK, T4SS component 
11SAPIG20352111991..2113850 [-], 1860membrane protein, putativeYddG, T4SS component 
12SAPIG20362113855..2115093 [-], 1239ftsk/spoiiie family proteinYdcQ, T4SS component 
13SAPIG20372115096..2115212 [-], 117ftsk/spoiiie family proteinYdcQ, T4SS component 
14SAPIG20382115266..2117761 [-], 2496conserved hypothetical proteinYddE, T4SS component 
15SAPIG20392117796..2118179 [-], 384conserved hypothetical proteinYddD, T4SS component 
16SAPIG20402118191..2118451 [-], 261conserved hypothetical proteinYddC, T4SS component 
17SAPIG20412118456..2119511 [-], 1056conserved hypothetical proteinYddB, T4SS component 
18SAPIG20422119572..2120351 [-], 780replication initiation factor family proteinRelaxase, MOBT Family
19SAPIG20432120348..2120518 [-], 171replication initiation factor family protein
20SAPIG20442120837..2121139 [-], 303conserved hypothetical protein
21SAPIG20452121153..2121473 [-], 321conserved hypothetical protein
22SAPIG20462121624..2121908 [-], 285conserved hypothetical protein
23SAPIG20472121940..2122191 [-], 252conserved hypothetical protein
24SAPIG20482122188..2122745 [-], 558conserved hypothetical protein
25SAPIG20492122805..2123329 [-], 525conserved hypothetical protein
26SAPIG20502123450..2124013 [+], 564thioredoxin
27SAPIG20512124077..2124817 [-], 741membrane protein, putative
28SAPIG20522124817..2125689 [-], 873ABC transporter
29SAPIG20532125686..2126366 [-], 681membrane protein, putative
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins17Fasta
Identified as part of this study from AM990992