ICEberg
I. Information of ICE
ICEberg ID354
Name ICESa1 This is a predicted ICE derived from literature
FamilyICE6013
OrganismStaphylococcus aureus subsp. aureus ST398
Size (bp)13373
GC content [Genome] (%)30.12[32.92]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAM990992 (complete ICE sequence in this genome)
Replicon chromosome (2872582 bp, BioProject:29427) [AM990992]
Genome coordinates74898..88270 
Putative oriT region -
Putative relaxase coordinates: 85882..86661; Locus tag: SAPIG0081;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICESa1 is not available.



The graph information of ICESa1 components from AM990992
Complete gene list of ICESa1 from AM990992
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SAPIG006370210..70470 [+], 261conserved protein YrkD
2SAPIG006470494..71225 [+], 732domain of unknown function, putative
3SAPIG006571434..71604 [+], 171copper P-type ATPase AtkB
4SAPIG006671622..72167 [+], 546lipoprotein, putative
5SAPIG006772448..74238 [+], 1791hypothetical protein
6SAPIG006874279..74932 [+], 654hypothetical protein
7SAPIG006975118..75471 [-], 354transposase InsI for insertion sequence element IS30B/C/DIntegrase 
8SAPIG007075635..76138 [-], 504N-region of transposase of
9SAPIG007176247..76603 [-], 357lipoprotein, putative
10SAPIG007276659..77249 [-], 591conserved hypothetical protein
11SAPIG007377256..78302 [-], 1047transfer complex protein TraGPrgK, T4SS component 
12SAPIG007478292..80160 [-], 1869membrane protein, putativeYddG, T4SS component 
13SAPIG007580165..81403 [-], 1239ftsk/spoiiie family proteinYdcQ, T4SS component 
14SAPIG007681406..81522 [-], 117ftsk/spoiiie family proteinYdcQ, T4SS component 
15SAPIG007781576..84071 [-], 2496conserved hypothetical proteinYddE, T4SS component 
16SAPIG007884106..84489 [-], 384conserved hypothetical proteinYddD, T4SS component 
17SAPIG007984501..84761 [-], 261conserved hypothetical proteinYddC, T4SS component 
18SAPIG008084766..85821 [-], 1056conserved hypothetical proteinYddB, T4SS component 
19SAPIG008185882..86661 [-], 780replication initiation factor family proteinRelaxase, MOBT Family
20SAPIG008286658..86828 [-], 171replication initiation factor family protein
21SAPIG008387147..87449 [-], 303conserved hypothetical protein
22SAPIG008487463..87783 [-], 321conserved hypothetical protein
23SAPIG008587934..88218 [-], 285conserved hypothetical protein
24SAPIG008688318..88812 [+], 495conserved hypothetical protein
25SAPIG008789066..91270 [+], 2205trans-Golgi membrane protein p230
26SAPIG008891501..91725 [+], 225transposase for insertion sequence element E
27SAPIG008991737..92735 [+], 999transposase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins17Fasta
(1) Schijffelen MJ; Boel CH; van Strijp JA; Fluit AC (2010). Whole genome analysis of a livestock-associated methicillin-resistant Staphylococcus aureus ST398 isolate from a case of human endocarditis. BMC Genomics. 0.719444444. [PudMed:20546576]