ICEberg
I. Information of ICE
ICEberg ID350
Name ICEHpaT3T1 This is a predicted ICE derived from literature
FamilyICEHin1056
OrganismHaemophilus parainfluenzae T3T1
Size (bp)60056
GC content [Genome] (%)37.76[39.57]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceFQ312002 (complete ICE sequence in this genome)
Replicon[FQ312002]
Genome coordinates1153089..1213144 
Putative oriT region -
Putative relaxase coordinates: 1154227..1156119; Locus tag: PARA_11500;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICEHpaT3T1 is not available.



The graph information of ICEHpaT3T1 components from FQ312002
Complete gene list of ICEHpaT3T1 from FQ312002
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1PARA_114401148671..1149465 [-], 795hydoxyethylthiazole kinase
2PARA_114501149481..1150128 [-], 648-
3PARA_114601150138..1151082 [-], 945-
4PARA_114701151108..1151845 [-], 738-
5PARA_114801151842..1152567 [-], 726-
6PARA_114901153323..1154165 [-], 843putative site-specific recombinaseIntegrase 
7PARA_115001154227..1156119 [-], 1893-Relaxase, MOBH Family
8PARA_115101156356..1157060 [+], 705putative uncharacterized protein
9PARA_115201157375..1158073 [-], 699putative dna-binding protein
10PARA_115301158352..1158588 [+], 237-
11PARA_115501159230..1159496 [-], 267predicted toxin of the YafQ-DinJ toxin-antitoxin system
12PARA_115601159480..1159824 [-], 345-
13PARA_115701160468..1161058 [+], 591e14 prophage; site-specific DNA recombinase
14Tn10L1161320..1162528 [+], 1209tn10 transposase for is10 left
15PARA_115901162538..1162663 [-], 126putative transcriptional regulator
16gltS1162894..1164099 [-], 1206putative glutamate permease
17ybeB1164543..1164863 [+], 321putative monooxygenase
18ybeA1164745..1165242 [+], 498ybea protein
19ybdA1165250..1165936 [+], 687putative transcriptional regulator
20tetR1165914..1166540 [-], 627tetr (tetracycline repressor protein)
21tetA1166685..1167824 [+], 1140tetracycline antiporter protein (tetracycline resistance protein)
22tetC1167937..1168605 [-], 669tetracycline transcriptional regulator
23tetD1168618..1169034 [+], 417tetd (tetracycline resistance protein d)
24R00851169044..1170252 [-], 1209is10 transposase
25PARA_116901170816..1171577 [-], 762-
26PARA_117001171681..1172634 [-], 954-
27PARA_117101172765..1172923 [-], 159-
28PARA_117201172927..1173175 [-], 249-
29PARA_117301173178..1173411 [-], 234-
30PARA_117401173496..1173915 [-], 420-
31PARA_117501174227..1174670 [+], 444-Tfc24, T4SS component 
32PARA_117601174667..1175608 [+], 942-Tfc23, T4SS component 
33PARA_117701175623..1177623 [+], 2001-Tfc22, T4SS component 
34PARA_117801177635..1178042 [+], 408-Tfc21, T4SS component 
35PARA_117901178087..1178266 [-], 180-
36PARA_118001178464..1178820 [+], 357-Tfc20, T4SS component 
37PARA_118101178846..1180342 [-], 1497-Tfc19, T4SS component 
38PARA_118201180351..1180674 [-], 324-Tfc18, T4SS component 
39PARA_118301180684..1181091 [-], 408-Tfc17, T4SS component 
40PARA_118401181099..1183969 [-], 2871-Tfc16, T4SS component 
41PARA_118501183985..1184392 [-], 408-Tfc15, T4SS component 
42PARA_118601184402..1185802 [-], 1401putative exported protein precursorTfc14, T4SS component 
43PARA_118701185813..1186682 [-], 870-Tfc13, T4SS component 
44PARA_118801186682..1187326 [-], 645-Tfc12, T4SS component 
45PARA_118901187338..1187709 [-], 372conserved putative membrane proteinTfc11, T4SS component 
46PARA_119001187729..1188130 [-], 402conserved putative membrane proteinTfc10, T4SS component 
47PARA_119101188150..1188395 [-], 246-
48PARA_119201188399..1188749 [-], 351conserved putative exported proteinTfc9, T4SS component 
49PARA_119301188880..1189566 [-], 687conserved putative membrane proteinTfc8, T4SS component 
50PARA_119401189566..1189892 [-], 327putative uncharacterized proteinTfc7, T4SS component 
51PARA_119501189885..1192134 [-], 2250putative uncharacterized proteinTfc6, T4SS component 
52PARA_119601192131..1192637 [-], 507conserved putative exported proteinTfc5, T4SS component 
53PARA_119701192653..1193411 [-], 759-Tfc4, T4SS component 
54PARA_119801193390..1194130 [-], 741putative exported protein precursorTfc3, T4SS component 
55pilL1194135..1194761 [-], 627putative lipoprotein precursorTfc2, T4SS component 
56PARA_120001194860..1195624 [-], 765-Tfc1, T4SS component 
57PARA_120101195682..1196278 [-], 597-
58PARA_120201196371..1196841 [-], 471-
59PARA_120301196981..1197622 [-], 642-
60PARA_120401197730..1198164 [-], 435-
61PARA_120701199012..1199458 [-], 447-
62PARA_120801199451..1200581 [-], 1131-
63PARA_120901200649..1202694 [-], 2046dna topoisomerase iii (ec 5.99.1.2)
64PARA_121001202968..1203156 [-], 189possible filamentous phage ctx rstr-like repressor
65PARA_121101203281..1203961 [+], 681-
66PARA_121201204513..1205031 [-], 519-
67PARA_121301205058..1205480 [-], 423-
68PARA_121401205726..1206199 [-], 474-
69PARA_121501206214..1206969 [-], 756-
70PARA_121601207194..1208417 [-], 1224-
71PARA_121701208567..1209118 [-], 552-
72PARA_121801209118..1210818 [-], 1701-
73PARA_121901210811..1212166 [-], 1356replicative dna helicase (ec 3.6.1.-)
74PARA_122001212168..1213004 [-], 837predicted atpase involved in chromosome partitioning
75PARA_122101213176..1213373 [-], 198-
76PARA_122201213607..1214716 [+], 1110cystathionine gamma-synthase, PLP-dependent
77PARA_122301214834..1215157 [+], 324thioredoxin 1
78PARA_122401215211..1216020 [-], 810-
79PARA_122501216221..1216805 [+], 585D-sedoheptulose 7-phosphate isomerase
80PARA_122601216955..1217692 [+], 738arginine transporter subunit
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins69Fasta
(1) Juhas M; Power PM; Harding RM; Ferguson DJ; Dimopoulou ID; Elamin AR; Mohd-Zain Z; Hood DW; Adegbola R; Erwin A; Smith A; Munson RS; Harrison A; Mansfield L; Bentley S; Crook DW (2007). Sequence and functional analyses of Haemophilus spp. genomic islands. Genome Biol. 8(11):R237. [PudMed:17996041] in_silico
 
in_silico in silico analysis literature