ICEberg
I. Information of ICE
ICEberg ID35
Name ICEVchVie1 This ICE is derived from experimental literature
FamilySXT/R391
OrganismVibrio cholerae V21
Size (bp)-
GC content [Genome] (%)-
Insertion siteprfC
FunctionAminoglycosides resistance
Species that ICE can be transferred to-
Nucleotide SequenceAB114188 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEVchVie1 is not available.



The graph information of ICEVchVie1 components from AB114188
Incomplete gene list of ICEVchVie1 from AB114188
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1int1..1242 [-], 1242integraseIntegrase 
2s0021244..1513 [-], 270hypothetical protein
3s0031516..2490 [-], 975hypothetical protein
4rumB3409..4581 [-], 1173UV repair DNA polymerase
5tnp4878..5471 [+], 594putative transposase
6tnpA5585..8485 [+], 2901putative transposase
7tnpB8980..10473 [+], 1494putative transposase
8s01310504..11388 [+], 885hypothetical protein
9floR11605..12819 [+], 1215florfenicol exporterAR 
10s01512847..13152 [+], 306hypothetical protein
11tnpB13264..13803 [+], 540putative transposase
12strB13775..14608 [-], 834streptomycin phosphotransferase
13merR14663..14956 [-], 294MerR
14tetR15121..15771 [-], 651tetracycline resistance repressor protein
15tetA15877..17076 [+], 1200tetracycline resistance protein AAR 
16ORFB17108..17625 [-], 518hypothetical protein
17tnpB17625..17759 [+], 135putative transposase
18strB17731..18567 [-], 837streptomycin phosphotransferaseAR 
19strA18567..19370 [-], 804streptomycin phosphotransferaseAR 
20sulII19431..20246 [-], 816dihydropteroate synthase type IIAR 
21tnpA20717..22330 [+], 1614putative transferase
22s02121798..22520 [-], 723hypothetical protein
23rumB22673..22993 [-], 321UV repair DNA polymerase
24rumA22950..23399 [-], 450UV repair
 
integrase Gene may contribute to site-specific recombination
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins24Fasta
(1) Ceccarelli D; Daccord A; Rene M; Burrus V (2008). Identification of the origin of transfer (oriT) and a new gene required for mobilization of the SXT/R391 family of integrating conjugative elements. J Bacteriol. 190(15):5328-38. [PudMed:18539733] experimental
 
experimental experimental literature