ICEberg
I. Information of ICE
ICEberg ID341
Name ICEAdeBC-1 This is a putative ICE identified in this study by Blast
FamilyTn4371
OrganismAlicycliphilus denitrificans BC
Size (bp)46351
GC content [Genome] (%)64.38
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP002449 (complete ICE sequence in this genome)
Replicon[NC_014910]
Genome coordinates233693..280043 
Putative oriT region -
Putative relaxase coordinates: 260164..262146; Locus tag: Alide_0233;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of ICEAdeBC-1 is not available.



The graph information of ICEAdeBC-1 components from CP002449
Complete gene list of ICEAdeBC-1 from CP002449
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1Alide_0206231466..232395 [+], 930CRISPR-associated protein Cas1
2Alide_0207232438..232743 [+], 306CRISPR-associated protein Cas2
3Alide_0209233693..234955 [-], 1263conjugation TrbI family proteinTrbI, T4SS component 
4Alide_0210234957..235937 [-], 981P-type conjugative transfer protein TrbGTrbG, T4SS component 
5Alide_0211235934..236638 [-], 705conjugal transfer protein TrbFTrbF, T4SS component 
6Alide_0212236657..237991 [-], 1335P-type conjugative transfer protein TrbLTrbL, T4SS component 
7Alide_0213238004..238729 [-], 726P-type conjugative transfer protein TrbJTrbJ, T4SS component 
8Alide_0214238726..241161 [-], 2436CagE, TrbE, VirB component of type IV transporter system, conserved region proteinTrbE, T4SS component 
9Alide_0215241171..241443 [-], 273putative conjugal transfer TrbD transmembrane proteinTrbD, T4SS component 
10Alide_0216241440..241817 [-], 378Conjugal transfer protein TrbCTrbC, T4SS component 
11Alide_0217241814..242848 [-], 1035P-type conjugative transfer ATPase TrbBTrbB, T4SS component 
12Alide_0218242845..243291 [-], 447CopG/DNA-binding domain-containing protein
13Alide_0219243288..245291 [-], 2004TRAG family proteinVirD4, T4SS component 
14Alide_0220245507..245779 [-], 273putative lipoprotein
15Alide_0221245815..246708 [-], 894LysR substrate-binding protein
16Alide_0222246778..249966 [-], 3189heavy metal efflux pump, CzcA family
17Alide_0223249983..251575 [-], 1593efflux transporter, RND family, MFP subunit
18Alide_0224251578..252903 [-], 1326outer membrane efflux protein
19Alide_0225253070..253423 [-], 354hypothetical protein
20Alide_0226253630..253965 [-], 336hypothetical protein
21Alide_0227254110..254796 [+], 687heavy metal response regulator
22Alide_0228254925..256115 [+], 1191heavy metal sensor kinase
23Alide_0229256151..256843 [-], 693transporter
24Alide_0230256847..257137 [-], 291hypothetical protein
25Alide_0231257160..259469 [-], 2310heavy metal translocating P-type ATPase
26Alide_0232259708..260163 [+], 456Cd(II)/Pb(II)-responsive transcriptional regulator
27Alide_0233260164..262146 [-], 1983hypothetical proteinRelaxase, MOBL Family
28Alide_0234262143..262598 [-], 456hypothetical protein
29Alide_0235262595..263194 [-], 600Peptidase S26, conserved region proteinTraF, T4SS component 
30Alide_0236263191..263736 [-], 546hypothetical protein
31Alide_0237263733..264017 [-], 285hypothetical protein
32Alide_0238264014..264652 [-], 639cobyrinic acid ac-diamide synthase
33Alide_0239264906..265739 [-], 834Replication initiator protein A
34Alide_0240265766..266047 [-], 282hypothetical protein
35Alide_0241266131..266904 [-], 774hypothetical protein
36Alide_0242267233..267583 [-], 351putative lipoprotein
37Alide_0243267842..268135 [+], 294helix-turn-helix domain protein
38Alide_0244268520..268834 [-], 315protein of unknown function DUF736TraF, T4SS component 
39Alide_0245269905..270819 [+], 915putative phage associated protein
40Alide_0246270960..271802 [+], 843RelA/SpoT domain protein
41Alide_0247271936..272145 [-], 210hypothetical protein
42Alide_0248272208..274262 [-], 2055ParB domain protein nuclease
43Alide_0249274328..275155 [-], 828hypothetical protein
44Alide_0250276176..276409 [+], 234hypothetical protein
45Alide_0251276459..276767 [+], 309helix-turn-helix domain protein
46Alide_0252276730..277758 [+], 1029retron reverse transcriptase
47Alide_0253277930..278247 [-], 318putative transcriptional regulator
48Alide_0254278244..278573 [-], 330addiction module killer protein
49Alide_0255278679..280043 [-], 1365integrase family proteinIntegrase 
50Alide_0256284052..284594 [-], 543Shikimate kinase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins47Fasta
Identified as part of this study from CP002449