ICEberg
I. Information of ICE
ICEberg ID340
Name ICE(Tn4371)6065 This is a predicted ICE derived from literature
FamilyTn4371
OrganismPolaromonas naphthalenivorans CJ2
Size (bp)70106
GC content [Genome] (%)63.12
Insertion site-
FunctionBiphenyl degradation
Species that ICE can be transferred to-
Nucleotide SequenceCP000530 (complete ICE sequence in this genome)
Replicon plasmid pPNAP01 (353291 bp, BioProject:13418) [NC_008757]
Genome coordinates12802..81711 
Putative oriT region -
Putative relaxase coordinates: 41133..43094; Locus tag: Pnap_4171;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of ICE(Tn4371)6065 is not available.



The graph information of ICE(Tn4371)6065 components from CP000530
Complete gene list of ICE(Tn4371)6065 from CP000530
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1Pnap_41308115..8825 [+], 711hypothetical protein
2Pnap_41339783..10319 [-], 537hypothetical protein
3Pnap_413410764..11669 [+], 906hypothetical protein
4Pnap_413511757..12239 [+], 483hypothetical protein
5Pnap_413612451..12690 [+], 240hypothetical protein
6Pnap_413712802..14004 [+], 1203phage integrase family proteinIntegrase 
7Pnap_413814028..14369 [+], 342protein of unknown function DUF891
8Pnap_413914356..14679 [+], 324putative transcriptional regulator
9Pnap_414015183..15839 [-], 657OmpW family protein
10Pnap_414115986..16846 [-], 861alpha/beta hydrolase fold
11Pnap_414216917..17957 [-], 1041pyruvate carboxyltransferase
12Pnap_414317975..18889 [-], 915Semialdehyde dehydrogenase, NAD - binding
13Pnap_414418910..19692 [-], 7834-oxalocrotonate decarboxylase
14Pnap_414519780..20391 [-], 612Glutathione S-transferase, C-terminal domain
15Pnap_414620423..21301 [-], 879Glyoxalase/bleomycin resistance protein/dioxygenase
16Pnap_414721312..22142 [-], 831short-chain dehydrogenase/reductase SDR
17Pnap_414822185..23411 [-], 1227FAD-dependent pyridine nucleotide-disulphide oxidoreductase
18Pnap_414923408..23737 [-], 330Rieske (2Fe-2S) domain protein
19Pnap_415023849..24256 [-], 408conserved hypothetical membrane protein, biphenyl pathway
20Pnap_415124295..24861 [-], 567Benzene 1,2-dioxygenase
21Pnap_415224982..26352 [-], 1371ring hydroxylating dioxygenase, alpha subunit
22Pnap_415326444..27178 [-], 735transcriptional regulator, GntR family
23Pnap_415427260..27766 [-], 507conserved hypothetical protein
24Pnap_415527988..28539 [-], 552hypothetical protein
25Pnap_415628650..29477 [+], 828protein of unknown function DUF932
26Pnap_415730595..31101 [+], 507DNA repair protein RadC
27Pnap_415931719..33758 [+], 2040ParB domain protein nuclease
28Pnap_416134523..34831 [+], 309protein of unknown function DUF736TraF, T4SS component 
29Pnap_416234878..35174 [-], 297transcriptional regulator, XRE family
30Pnap_416335617..35967 [+], 351putative lipoprotein
31Pnap_416436329..37126 [+], 798conserved hypothetical protein
32Pnap_416537211..37513 [+], 303conserved hypothetical protein
33Pnap_416637549..38400 [+], 852conserved hypothetical replication initiator and transcription repressor protein
34Pnap_416738651..39289 [+], 639Cobyrinic acid a,c-diamide synthase
35Pnap_416839286..39528 [+], 243conserved hypothetical protein
36Pnap_416939525..40070 [+], 546conserved hypothetical protein
37Pnap_417040067..40618 [+], 552putative conjugal transfer TRAF transmembrane proteinTraF, T4SS component 
38Pnap_417141133..43094 [+], 1962conserved hypothetical proteinRelaxase, MOBL Family
39Pnap_417243455..44072 [+], 618transcriptional regulator, TetR family
40Pnap_417344142..44729 [+], 588Late embryogenesis abundant protein
41Pnap_417444817..45263 [+], 447conserved hypothetical protein
42Pnap_417545476..46177 [+], 702conserved hypothetical protein
43Pnap_417646177..47925 [+], 17492-octaprenylphenol hydroxylase
44Pnap_417747922..50582 [+], 2661Glycosyltransferase 28, C-terminal domain
45Pnap_417850579..51550 [+], 972Patatin
46Pnap_417951543..52352 [+], 810conserved hypothetical protein
47Pnap_418052349..53449 [+], 1101efflux transporter, RND family, MFP subunit
48Pnap_418153446..56727 [+], 3282acriflavin resistance protein
49Pnap_418256724..58019 [+], 1296outer membrane efflux protein
50Pnap_418458305..59330 [-], 1026transcriptional regulator, AraC family
51Pnap_418559556..61814 [+], 2259oxidoreductase FAD/NAD(P)-binding domain protein
52Pnap_418661877..63517 [+], 1641glucose-methanol-choline oxidoreductase
53Pnap_418763521..65158 [+], 1638AMP-dependent synthetase and ligase
54Pnap_418865158..66897 [+], 1740aldehyde dehydrogenase
55Pnap_418966988..67698 [+], 711OmpW family protein
56Pnap_419168268..69179 [+], 912transcriptional regulator, LysR family
57Pnap_419269191..69433 [+], 243conserved hypothetical proteinTrbJ, T4SS component 
58Pnap_419369719..71710 [+], 1992TRAG family proteinVirD4, T4SS component 
59Pnap_419471707..72159 [+], 453CopG domain protein DNA-binding domain protein
60Pnap_419572156..73187 [+], 1032type II secretion system protein ETrbB, T4SS component 
61Pnap_419673184..73543 [+], 360Conjugal transfer protein TrbCTrbC, T4SS component 
62Pnap_419773540..73824 [+], 285putative conjugal transfer TrbD transmembrane proteinTrbD, T4SS component 
63Pnap_419873846..76287 [+], 2442AAA ATPaseTrbE, T4SS component 
64Pnap_419976284..77012 [+], 729putative conjugal transfer TrbJ signal peptide proteinTrbJ, T4SS component 
65Pnap_420077023..78396 [+], 1374TrbL/VirB6 plasmid conjugal transfer proteinTrbL, T4SS component 
66Pnap_420178409..79113 [+], 705Conjugal transfer proteinTrbF, T4SS component 
67Pnap_420279110..80123 [+], 1014Conjugal transfer protein TrbG/VirB9/CagXTrbG, T4SS component 
68Pnap_420380126..81445 [+], 1320conjugation TrbI family proteinTrbI, T4SS component 
69Pnap_420481442..81711 [+], 270Uncharacterized conserved small protein-like protein
70Pnap_420582262..82612 [-], 351protein of unknown function DUF805
71Pnap_420682654..83067 [-], 414hypothetical protein
72Pnap_420783134..83589 [-], 456hypothetical protein
73Pnap_420883904..84173 [-], 270hypothetical protein
74Pnap_420985400..85678 [+], 279hypothetical protein
75Pnap_421085689..85958 [+], 270conserved hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins64Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature