ICEberg
I. Information of ICE
ICEberg ID339
Name ICE(Tn4371)6064 This is a predicted ICE derived from literature
FamilyTn4371
OrganismBurkholderia pseudomallei MSHR346
Size (bp)49278
GC content [Genome] (%)62.21
Insertion site-
FunctionMetabolism
Species that ICE can be transferred to-
Nucleotide SequenceCP001408 (complete ICE sequence in this genome)
Replicon chromosome I (4098576 bp, BioProject:29855) [NC_012695]
Genome coordinates896551..945569 
Putative oriT region -
Putative relaxase coordinates: 921965..923926; Locus tag: GBP346_A0960;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of ICE(Tn4371)6064 is not available.



The graph information of ICE(Tn4371)6064 components from CP001408
Complete gene list of ICE(Tn4371)6064 from CP001408
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1GBP346_A0935893036..895237 [+], 2202conserved hypothetical protein
2GBP346_A0936895273..896229 [-], 957integrase core domain protein
3GBP346_A0937896551..897882 [+], 1332phage integrase family proteinIntegrase 
4GBP346_A0938897906..898256 [+], 351probable addiction module killer protein
5GBP346_A0939898264..898548 [+], 285putative transcriptional regulator
6GBP346_A0940898662..899342 [+], 681hypothetical protein
7GBP346_A0941900049..901143 [+], 1095hypothetical protein
8GBP346_A0942901323..906524 [+], 5202conserved hypothetical protein
9GBP346_A0943906804..908363 [-], 1560conserved hypothetical protein
10GBP346_A0944908959..909831 [+], 873protein YafZ
11GBP346_A0945909792..911954 [+], 2163ParB domain protein nuclease
12GBP346_A0946912106..912225 [+], 120conserved hypothetical protein
13GBP346_A0947912467..913282 [+], 816conserved hypothetical protein
14GBP346_A0948914090..914404 [+], 315conserved hypothetical proteinTraF, T4SS component 
15GBP346_A0949914770..915813 [-], 1044conserved hypothetical protein
16GBP346_A0950916051..916344 [-], 294helix-turn-helix domain protein
17GBP346_A0951916567..916914 [+], 348conserved hypothetical protein
18GBP346_A0952916983..917126 [-], 144hypothetical protein
19GBP346_A0953917256..918005 [+], 750conserved hypothetical protein
20GBP346_A0954918089..918379 [+], 291conserved hypothetical protein
21GBP346_A0955918406..919263 [+], 858replication protein A
22GBP346_A0956919517..920155 [+], 639cobyrinic acid ac-diamide synthase
23GBP346_A0957920143..920415 [+], 273conserved hypothetical protein
24GBP346_A0958920412..920945 [+], 534conserved hypothetical protein
25GBP346_A0959920942..921529 [+], 588traf peptidase, serine peptidase, merops family s26cTraF, T4SS component 
26GBP346_A0960921965..923926 [+], 1962conserved hypothetical proteinRelaxase, MOBL Family
27GBP346_A0961925072..926466 [+], 1395Rieske (2Fe-2S) domain protein
28GBP346_A0962926463..926939 [+], 477anthranilate dioxygenase small subunit
29GBP346_A0963928663..929502 [+], 840hydroxyquinol 1,2-dioxygenase (1,2-HQD)
30GBP346_A0964929707..930783 [+], 1077maleylacetate reductase
31GBP346_A0965931006..931860 [+], 8554-hydroxybenzoate transporter
32GBP346_A0966932160..932309 [+], 150hypothetical protein
33GBP346_A0967932425..933393 [+], 969transcriptional regulator, LysR family
34GBP346_A0968933772..935775 [+], 2004conjugal transfer protein TraGVirD4, T4SS component 
35GBP346_A0969935772..936236 [+], 465CopG domain protein DNA-binding domain protein
36trbB936233..937261 [+], 1029P-type conjugative transfer ATPase TrbBTrbB, T4SS component 
37GBP346_A0971937258..937632 [+], 375conjugal transfer protein TrbCTrbC, T4SS component 
38GBP346_A0972937629..937898 [+], 270conjugal transfer proteinTrbD, T4SS component 
39GBP346_A0973937909..940371 [+], 2463ATPaseTrbE, T4SS component 
40trbJ940368..941132 [+], 765P-type conjugative transfer protein TrbJTrbJ, T4SS component 
41trbL941181..942329 [+], 1149P-type conjugative transfer protein TrbLTrbL, T4SS component 
42GBP346_A0976942342..943046 [+], 705conjugal transfer proteinTrbF, T4SS component 
43trbG943043..944047 [+], 1005P-type conjugative transfer protein TrbGTrbG, T4SS component 
44GBP346_A0978944050..945330 [+], 1281conjugation TrbI family proteinTrbI, T4SS component 
45GBP346_A0979945327..945569 [+], 243conserved domain protein
46GBP346_A0980946517..946909 [-], 393ISPsy5, transposase
47GBP346_A0981947965..948105 [+], 141hypothetical protein
48GBP346_A0982948470..949219 [+], 7503-oxoadipate CoA-transferase, A subunit
49GBP346_A0983949216..949884 [+], 6693-oxoadipate CoA-transferase subunit B (Beta-ketoadipate:succinyl-CoA transferase subunit B)
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins43Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature