ICEberg
I. Information of ICE
ICEberg ID336
Name ICEAviDJ-1 This is a putative ICE identified in this study by Blast
FamilyTn4371
OrganismAzotobacter vinelandii DJ
Size (bp)48653
GC content [Genome] (%)65.1[65.68]
Insertion siteTTTTTTGT
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP001157 (complete ICE sequence in this genome)
Replicon chromosome (5365318 bp, BioProject:16) [NC_012560]
Genome coordinates3632448..3681100 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEAviDJ-1 is not available.



The graph information of ICEAviDJ-1 components from CP001157
Complete gene list of ICEAviDJ-1 from CP001157
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1Avin_355403628485..3628931 [+], 447Iron-sulfur binding oxidoreductase
2Avin_355503628936..3631176 [+], 2241Oxidoreductase, xanthine dehydrogensae-like protein
3Avin_355603631223..3631330 [+], 108hypothetical protein
4Avin_355703631382..3631699 [+], 318conserved hypothetical protein
5Avin_355803631903..3632400 [-], 498conserved hypothetical protein
6Avin_355903632844..3633860 [-], 1017Transposase IS116/IS110/IS902
7Avin_356003633976..3634293 [+], 318transposase
8Avin_356203634554..3634799 [-], 246conserved hypothetical protein
9trbG3636078..3636974 [-], 897P-type conjugative transfer protein TrbGTrbG, T4SS component 
10trbF3637076..3637780 [-], 705Conjugal transfer protein TrbFTrbF, T4SS component 
11trbL3637811..3639184 [-], 1374P-type conjugative transfer protein TrbLTrbL, T4SS component 
12Avin_356703639181..3639483 [-], 303lipoproteinTrbJ, T4SS component 
13trbJ3639496..3640233 [-], 738P-type conjugative transfer protein TrbJTrbJ, T4SS component 
14trbE3640230..3642680 [-], 2451P-type conjugative transfer protein TrbETrbE, T4SS component 
15trbD3642693..3642977 [-], 285P-type conjugative transfer protein TrbDTrbD, T4SS component 
16trbC3642974..3643258 [-], 285P-type conjugative transfer protein TrbCTrbC, T4SS component 
17trbB3643354..3644406 [-], 1053P-type conjugative transfer ATPase TrbBTrbB, T4SS component 
18Avin_357303644403..3644867 [-], 465conserved hypothetical protein
19Avin_357403644864..3646864 [-], 2001TRAG family bacterial conjugation proteinVirD4, T4SS component 
20Avin_357503647100..3647366 [-], 267lipoprotein
21Avin_357603647363..3648307 [-], 945Bacterial regulatory protein, LysR family
22Avin_357703648318..3649796 [-], 1479Major Facilitator Superfamily transporter
23Avin_357803649892..3650509 [+], 618Bacterial regulatory protein, TetR
24Avin_357903650610..3651641 [-], 1032conserved hypothetical protein
25Avin_358003651699..3652562 [-], 864Conserved hypothetical protein
26Avin_358103652713..3653264 [+], 552Regulatory protein, TetR-family
27Avin_358203653311..3654111 [-], 801Oxidoreductase
28Avin_358303654196..3655092 [+], 897Regulatory protein, LysR-family
29Avin_358403655160..3655423 [-], 264lipoprotein
30Avin_358503655420..3656364 [-], 945Regulatory protein, LysR-family
31Avin_358603656368..3657576 [-], 1209Major facilitator superfamily transporter
32Avin_358703657573..3658799 [-], 1227major facilitator family transporter
33Avin_358803658820..3660010 [-], 1191Beta-lactamase-like protein
34Avin_358903660127..3661056 [+], 930Regulatory protein, LysR family
35Avin_359003661086..3662264 [-], 1179chloramphenicol resistance protein
36Avin_359103662245..3662331 [+], 87hypothetical protein
37Avin_359203662423..3663337 [+], 915Regulatory protein, LysR family
38Avin_359303663354..3665339 [-], 1986conserved hypothetical protein
39traF3665788..3666312 [-], 525conjugative transfer signal peptidase TraFTraF, T4SS component 
40Avin_359503666384..3666842 [-], 459conserved hypothetical protein
41Avin_359603666926..3667180 [-], 255conserved hypothetical protein
42Avin_359703667177..3667815 [-], 639ATPase, ParA type
43Avin_359803668057..3668944 [-], 888conserved hypothetical replication initiator and transcription repressor protein
44Avin_359903668941..3669210 [-], 270conserved hypothetical protein
45Avin_360003669337..3670119 [-], 783conserved hypothetical protein
46Avin_360103670458..3670814 [-], 357lipoprotein
47Avin_360203671148..3671384 [+], 237Transcriptional regulator Cro/CI-like protein
48Avin_360303671427..3671564 [-], 138conserved hypothetical protein
49Avin_360403671645..3672151 [-], 507DNA repair protein RadC-like protein
50Avin_360503672551..3674056 [-], 1506C-5 cytosine-specific DNA methylase
51Avin_360603674155..3674235 [+], 81hypothetical protein
52Avin_360703674474..3675817 [-], 1344hypothetical protein
53Avin_360803675814..3677985 [-], 2172ATP binding/ATPase (HATPase_c) domain-containing protein
54Avin_360903677985..3678230 [-], 246conserved hypothetical protein
55Avin_361003678902..3679222 [-], 321transcriptional regulator
56Avin_361103679219..3679554 [-], 336conserved hypothetical protein
57Avin_361203679716..3680918 [-], 1203Phage integraseIntegrase 
58Avin_361303681193..3681702 [+], 510transposase of insertion sequence ISRm10-1, orfB C-terminus protein
59Avin_361403681873..3683078 [-], 1206FOG transposase
60Avin_361503683176..3684594 [-], 1419Bacterial regulatory protein, GntR
61Avin_361603684651..3684905 [-], 255transposase IS4 family
62Avin_361643685001..3685408 [-], 408transposase protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins52Fasta
Identified as part of this study from CP001157