ICEberg
I. Information of ICE
ICEberg ID335
Name ICERsoGMI1000-1 This is a predicted ICE derived from literature
FamilyTn4371
OrganismRalstonia solanacearum GMI1000
Size (bp)45922
GC content [Genome] (%)63.07[67.04]
Insertion siteTTTTTTAT
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAL646052 (complete ICE sequence in this genome)
Replicon chromosome (3716413 bp, BioProject:13) [NC_003295]
Genome coordinates2780064..2825985 
Putative oriT region -
Putative relaxase coordinates: 2804432..2806483; Locus tag: RSc2601;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of ICERsoGMI1000-1 is not available.



The graph information of ICERsoGMI1000-1 components from AL646052
Complete gene list of ICERsoGMI1000-1 from AL646052
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1RSc25662775576..2776091 [+], 516putative methylated-dna--protein-cysteine methyltransferase
2RSc25672776088..2776840 [+], 753conserved hypothetical protein
3alkB2776851..2777507 [+], 657probable alkylated dna repair protein
4alkA2777509..2778147 [+], 639probable dna-3-methyladenine glycosylase protein
5ada2778230..2779312 [+], 1083probable ada regulatory of adaptative response contains: methylated-dna--protein-cysteine methyltransferase ec 2.1.1.63 o-6-methylguanine-dna transcription regulator
6RSc25712779312..2779581 [+], 270conserved hypothetical protein
7RSc25722779621..2780043 [+], 423probable lipoprotein
8tISRso152780153..2781373 [+], 1221isrso15-transposase protein
9RSc25742781673..2781915 [-], 243conserved hypothetical protein
10trbI2781912..2783189 [-], 1278probable conjugal transfer trbi transmembrane proteinTrbI, T4SS component 
11trbG2783192..2784196 [-], 1005probable conjugal transfer lipoprotein trbgTrbG, T4SS component 
12trbF2784193..2784897 [-], 705probable conjugal transfer trbf transmembrane proteinTrbF, T4SS component 
13trbL2784928..2786301 [-], 1374putative conjugal transfer trbl transmembrane proteinTrbL, T4SS component 
14RSc25792786298..2786624 [-], 327putative lipoproteinTrbJ, T4SS component 
15trbJ2786637..2787374 [-], 738probable conjugal transfer trbj signal peptide proteinTrbJ, T4SS component 
16trbE2787371..2789821 [-], 2451probable conjugal transfer protein trbeTrbE, T4SS component 
17trbD2789834..2790106 [-], 273probable conjugal transfer trbd transmembrane proteinTrbD, T4SS component 
18trbC2790103..2790495 [-], 393probable conjugal transfer trbc transmembrane proteinTrbC, T4SS component 
19trbB2790492..2791559 [-], 1068probable conjugal transfer protein trbbTrbB, T4SS component 
20RSc25852791556..2792032 [-], 477hypothetical ribbon-helix-helix harboring protein
21traG2792029..2794056 [-], 2028probable plasmid conjugation trag transmembrane proteinVirD4, T4SS component 
22RSc25872794292..2794555 [-], 264putative lipoprotein
23traR2794552..2795496 [-], 945probable plasmid replication regulatory trar transcription regulator protein
24limA2795654..2796046 [-], 393probable limonene-1,2-epoxide hydrolase protein
25limA22796232..2796618 [-], 387putative limonene-1,2-epoxide hydrolase protein
26RSc25912796769..2797659 [+], 891probable transcriptional regulator transcription regulator protein
27RSc25922797761..2798117 [+], 357hypothetical protein of unknown function duf419
28RSc25932798145..2799572 [-], 1428putative carboxylesterase, type b; protein
29gstJ2799637..2800311 [-], 675probable glutathione-s-transferase protein
30RSc25952800406..2800735 [-], 330conserved hypothetical protein with dimeric alpha-beta barrel
31RSc25962800779..2801369 [-], 591putative amidase related to nicotinamidase; protein
32RSc25972801443..2802201 [-], 759putative short-chain dehydrogenase/reductase sdr; oxidoreductase protein
33RSc25982802374..2803273 [+], 900probable transcription regulator protein
34RSc25992803326..2804081 [-], 756hypothetical protein
35RSc26002804006..2804443 [+], 438putative substrate-binding domain related to lysr regulator protein
36RSc26012804432..2806483 [-], 2052putative type iv secretory pathway vird2 (relaxase)-related proteinRelaxase, MOBL Family
37traF2806866..2807465 [-], 600probable conjugal transfer traf transmembrane proteinTraF, T4SS component 
38RSc26032807462..2808007 [-], 546conserved hypothetical protein
39RSc26042808004..2808288 [-], 285hypothetical ribbon-helix-helix protein
40parA32808276..2808914 [-], 639putative partition protein
41RSc26062809180..2810025 [-], 846probable replication initiation repa-like protein
42RSc26072810052..2810327 [-], 276putative dna binding protein
43RSc26082810442..2811212 [-], 771putative aspartate decarboxylase-like fold harboring protein
44RSc26092811557..2812150 [-], 594probable lipoprotein
45RSc26102812223..2812513 [+], 291putative transcription regulator protein
46RSc26112812522..2813085 [+], 564hypothetical tir protein
47RSc26122813107..2813955 [+], 849hypothetical transmembrane protein
48RSc26132814305..2814619 [-], 315hypothetical protein of unknown function duf736TraF, T4SS component 
49RSc26142815483..2816184 [-], 702conserved hypothetical protein
50RSc26152816196..2816681 [-], 486conserved hypothetical protein
51RSc26162816842..2817048 [-], 207conserved hypothetical protein
52RSc26172817109..2818902 [-], 1794conserved hypothetical protein
53RSc26182818983..2819813 [-], 831putative f plasmid gene 32-like protein
54RSc26192820359..2822662 [+], 2304conserved hypothetical protein
55radC22822729..2823238 [-], 510probable dna repair radc-like protein
56RSc26212823536..2824603 [-], 1068hypothetical protein of unknown function duf1016
57int2824600..2825802 [-], 1203integrase-tyrosine recombinase proteinIntegrase 
58purM2826032..2827093 [-], 1062probable phosphoribosylformylglycinamidine cyclo-ligase (airs)(phosphoribosyl-aminoimidazole synthetase) (air synthase) protein
59RSc26242827245..2828315 [+], 1071probable permease transmembrane transport protein
60RSc26252828338..2829039 [+], 702putative cog0593, atpase involved in dna replication initiation protein
61RSc26262829146..2829820 [+], 675probable had-superfamily subfamily ib, pspase-like; protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins50Fasta
(1) Salanoubat M; Genin S; Artiguenave F; Gouzy J; Mangenot S; Arlat M; Billault A; Brottier P; Camus JC; Cattolico L; Chandler M; Choisne N; Claudel-Renard C; Cunnac S; Demange N; Gaspin C; Lavie M; Moisan A; Robert C; Saurin W; Schiex T; Siguier P; Thebault P; Whalen M; Wincker P; Levy M; Weissenbach J; Boucher CA (2002). Genome sequence of the plant pathogen Ralstonia solanacearum. Nature. 415(6871):497-502. [PudMed:11823852]