ICEberg
I. Information of ICE
ICEberg ID324
Name ICESpnTCH8341-1 This is a putative ICE identified in this study by Blast
FamilyTn916
OrganismStreptococcus pneumoniae TCH8431/19A
Size (bp)26390
GC content [Genome] (%)37.88[39.84]
Insertion siteAT rich regions
FunctionTetracycline resistance
Species that ICE can be transferred to-
Nucleotide SequenceCP001993 (complete ICE sequence in this genome)
Replicon chromosome (2088772 bp, BioProject:49735) [NC_014251]
Genome coordinates2004999..2031388 
Putative oriT region -
Putative relaxase coordinates: 2007642..2008904; Locus tag: HMPREF0837_12195;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICESpnTCH8341-1 is not available.



The graph information of ICESpnTCH8341-1 components from CP001993
Complete gene list of ICESpnTCH8341-1 from CP001993
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1HMPREF0837_121852000721..2001737 [-], 1017LytR family transcriptional regulator
2HMPREF0837_121862001745..2002263 [-], 519GNAT family acetyltransferase
3HMPREF0837_121872002253..2002696 [-], 444ATP-binding protein
4HMPREF0837_121882002782..2003402 [-], 621lipoprotein
5HMPREF0837_121892003708..2004571 [-], 864transcriptional activator
6HMPREF0837_121902004762..2004932 [+], 171conserved hypothetical protein
7HMPREF0837_121912005334..2005648 [+], 315conjugative transposon protein
8HMPREF0837_121922005664..2006050 [+], 387conjugative transposon protein
9HMPREF0837_121932006079..2007464 [+], 1386FtsK/SpoIIIE family cell division proteinOrf21_Tn, T4SS component 
10HMPREF0837_121942007467..2007619 [+], 153conserved hypothetical protein
11HMPREF0837_121952007642..2008904 [+], 1263replication initiation proteinRelaxase, MOBT Family
12HMPREF0837_121962008894..2009061 [+], 168conserved hypothetical protein
13ermBP2009318..2010055 [+], 738rRNA (adenine-N(6)-)-methyltransferase
14HMPREF0837_121982010060..2010191 [+], 132conserved hypothetical protein
15HMPREF0837_121992010312..2011559 [-], 1248transposase
16HMPREF0837_122002011739..2011960 [+], 222conserved hypothetical proteinOrf19_Tn, T4SS component 
17ardA2012077..2012574 [+], 498antirestriction protein ArdA
18HMPREF0837_122022012549..2013055 [+], 507conjugative transposon membrane proteinOrf17_Tn, T4SS component 
19HMPREF0837_122032013039..2015486 [+], 2448conjugative transposon proteinOrf16_Tn, T4SS component 
20HMPREF0837_122042015489..2017666 [+], 2178conjugative transposon membrane proteinOrf15_Tn, T4SS component 
21HMPREF0837_122052017663..2018664 [+], 1002conserved NLP/P60 family proteinOrf14_Tn, T4SS component 
22HMPREF0837_122062018661..2019593 [+], 933conjugative transposon proteinOrf13_Tn, T4SS component 
23HMPREF0837_122072019955..2021889 [+], 1935tetracycline resistance protein Tet (M)
24HMPREF0837_122082022068..2022256 [+], 189conserved hypothetical protein
25umuC2022253..2022498 [+], 246SOS responce UmuC protein
26HMPREF0837_122102022495..2022830 [+], 336conserved hypothetical protein
27HMPREF0837_122112022843..2023211 [+], 369conserved hypothetical protein
28HMPREF0837_122122023198..2023497 [+], 300conserved hypothetical protein
29HMPREF0837_122132023615..2025078 [-], 1464ABC superfamily ATP binding cassette transporter, ABC protein
30mreA2025198..2026415 [-], 1218macrolide-efflux protein
31HMPREF0837_122152026801..2026986 [-], 186conserved hypothetical protein
32HMPREF0837_122162027493..2027684 [+], 192conserved hypothetical protein
33HMPREF0837_122172027744..2028097 [-], 354Tn916 transcriptional regulator
34HMPREF0837_122182028227..2028373 [+], 147conserved hypothetical protein
35HMPREF0837_122192028602..2029024 [+], 423conjugative transposon regulatory protein
36HMPREF0837_122202029021..2029251 [+], 231conjugative transposon protein
37xis2029712..2029915 [+], 204Tn916 excisionase (Xis) protein
38HMPREF0837_122222029997..2031214 [+], 1218phage integrase family site-specific recombinaseIntegrase 
39HMPREF0837_122232031564..2031704 [+], 141hypothetical protein
40HMPREF0837_122242031882..2031989 [+], 108conserved hypothetical protein
41HMPREF0837_122252032105..2034120 [+], 2016bacteriocin-associated integral membrane protein
42HMPREF0837_122262034122..2034754 [+], 633ABC superfamily ATP binding cassette transporter, ABC protein
43cinA22034895..2035056 [+], 162competence damage-inducible protein A
44ndk2035682..2036095 [-], 414nucleoside diphosphate kinase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins32Fasta
Identified as part of this study from CP001993