ICEberg
I. Information of ICE
ICEberg ID313
Name ICESsu98HAH33-1 This is a predicted ICE derived from literature
FamilyICESa2603
OrganismStreptococcus suis 98HAH33
Size (bp)18031
GC content [Genome] (%)38.79[41.11]
Insertion siteAT rich regions
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000408 (complete ICE sequence in this genome)
Replicon chromosome (2095698 bp, BioProject:17155) [NC_009443]
Genome coordinates887958..905988 
Putative oriT region -
Putative relaxase coordinates: 902140..903345; Locus tag: SSU98_0936;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICESsu98HAH33-1 is not available.



The graph information of ICESsu98HAH33-1 components from CP000408
Complete gene list of ICESsu98HAH33-1 from CP000408
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SSU98_0919884167..886032 [-], 1866Chromosome segregation ATPase
2SSU98_0920886019..886384 [-], 366unknown protein
3SSU98_0921886384..886959 [-], 576hypothetical protein
4SSU98_0922887114..888010 [+], 897putative Abi-alpha protein
5SSU98_0923888132..889349 [-], 1218Tn916, transposaseIntegrase 
6SSU98_0924889431..889634 [-], 204hypothetical protein
7SSU98_0925890322..890753 [-], 432hypothetical protein
8SSU98_0926891248..891601 [+], 354Tn916, transcriptional regulator, putative
9SSU98_0928891947..893881 [-], 1935Translation elongation factor (GTPases)
10SSU98_0927892774..892926 [+], 153hypothetical protein
11SSU98_0929894243..895175 [-], 933Tn916, hypothetical proteinOrf13_Tn, T4SS component 
12SSU98_0930895172..896173 [-], 1002hypothetical proteinOrf14_Tn, T4SS component 
13SSU98_0931896170..898347 [-], 2178membrane protein, putativeOrf15_Tn, T4SS component 
14SSU98_0932898350..900806 [-], 2457hypothetical proteinOrf16_Tn, T4SS component 
15SSU98_0933900781..901218 [-], 438hypothetical proteinOrf17_Tn, T4SS component 
16SSU98_0934901261..901758 [-], 498hypothetical protein
17SSU98_0935901786..902097 [-], 312hypothetical proteinOrf19_Tn, T4SS component 
18SSU98_0936902140..903345 [-], 1206Tn916, transcriptional regulator, putativeRelaxase, MOBT Family
19SSU98_0937903523..904908 [-], 1386hypothetical proteinOrf21_Tn, T4SS component 
20SSU98_0938904937..905323 [-], 387hypothetical protein
21SSU98_0939905339..905653 [-], 315hypothetical protein
22SSU98_0940906409..908241 [-], 1833DNA helicase
23SSU98_0941908213..908560 [-], 348hypothetical protein
24SSU98_0942908629..910299 [-], 1671hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins17Fasta
(1) Huang J; Liang Y; Guo D; Shang K; Ge L; Kashif J; Wang L (2016). Comparative Genomic Analysis of the ICESa2603 Family ICEs and Spread of erm(B)- and tet(O)-Carrying Transferable 89K-Subtype ICEs in Swine and Bovine Isolates in China. Front Microbiol. 7:55. [PudMed:26870017]
(2) Palmieri C; Varaldo PE; Facinelli B (2011). Streptococcus suis, an Emerging Drug-Resistant Animal and Human Pathogen. Front Microbiol. 0.246527778. [PudMed:22275909]
(3) Chen C; Tang J; Dong W; Wang C; Feng Y; Wang J; Zheng F; Pan X; Liu D; Li M; Song Y; Zhu X; Sun H; Feng T; Guo Z; Ju A; Ge J; Dong Y; Sun W; Jiang Y; Wang J; Yan J; Yang H; Wang X; Gao GF; Yang R; Wang J; Yu J (2007). A glimpse of streptococcal toxic shock syndrome from comparative genomics of S. suis 2 Chinese isolates. PLoS One. 2(3):e315. [PudMed:17375201]