ICEberg
I. Information of ICE
ICEberg ID312
Name ICECloUPII95-1 This is a putative ICE identified in this study by Blast
FamilyTn916
OrganismClostridiales genomosp. BVAB3 str. UPII9-5
Size (bp)18032
GC content [Genome] (%)38.84[44.21]
Insertion siteAT rich regions
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP001850 (complete ICE sequence in this genome)
Replicon chromosome (1810248 bp, BioProject:46219) [NC_013895]
Genome coordinates538276..556307 
Putative oriT region -
Putative relaxase coordinates: 540919..542124; Locus tag: HMPREF0868_1212;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICECloUPII95-1 is not available.



The graph information of ICECloUPII95-1 components from CP001850
Complete gene list of ICECloUPII95-1 from CP001850
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1HMPREF0868_1220534550..535209 [+], 660single-strand binding family protein
2HMPREF0868_1219535352..535558 [+], 207DNA-binding helix-turn-helix protein
3HMPREF0868_1218535649..536674 [+], 1026conserved hypothetical protein
4HMPREF0868_1217536674..537564 [+], 891conserved hypothetical protein
5HMPREF0868_1216537568..538287 [+], 720conserved domain protein
6HMPREF0868_1215538611..538925 [+], 315conserved hypothetical protein
7HMPREF0868_1214538941..539327 [+], 387conserved hypothetical protein
8HMPREF0868_1213539356..540741 [+], 1386FtsK/SpoIIIE family proteinOrf21_Tn, T4SS component 
9HMPREF0868_1212540919..542124 [+], 1206DNA-binding helix-turn-helix proteinRelaxase, MOBT Family
10HMPREF0868_1211542167..542388 [+], 222conserved hypothetical proteinOrf19_Tn, T4SS component 
11ardA542505..542999 [+], 495antirestriction protein
12HMPREF0868_1209542974..543480 [+], 507conserved hypothetical proteinOrf17_Tn, T4SS component 
13HMPREF0868_1208543464..544579 [+], 1116conserved domain proteinOrf16_Tn, T4SS component 
14HMPREF0868_1207544576..545910 [+], 1335ATP/GTP-binding family proteinOrf16_Tn, T4SS component 
15HMPREF0868_1206545913..548090 [+], 2178conserved hypothetical proteinOrf15_Tn, T4SS component 
16HMPREF0868_1205548087..549088 [+], 1002NlpC/P60 family proteinOrf14_Tn, T4SS component 
17HMPREF0868_1204549103..550020 [+], 918conserved hypothetical proteinOrf13_Tn, T4SS component 
18HMPREF0868_1203550265..550381 [+], 117tetracycline resistance determinant leader peptide
19HMPREF0868_1202550397..552316 [+], 1920putative translation elongation factor G
20HMPREF0868_1201552662..553015 [-], 354DNA-binding helix-turn-helix protein
21HMPREF0868_1200553520..553942 [+], 423sigma-70, region 4
22HMPREF0868_1199554233..554361 [-], 129conserved hypothetical protein
23HMPREF0868_1198554630..554833 [+], 204DNA binding domain protein, excisionase family
24HMPREF0868_1197555243..556133 [+], 891site-specific recombinase, phage integrase familyIntegrase 
25HMPREF0868_1196556418..557749 [-], 1332relaxase/mobilization nuclease domain protein
26HMPREF0868_1195557752..558108 [-], 357conserved hypothetical protein
27HMPREF0868_1194558382..559590 [+], 1209transcriptional regulator, AraC family
28HMPREF0868_1193559636..560616 [-], 981transcriptional regulator, AraC family
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins19Fasta
Identified as part of this study from CP001850