ICEberg
I. Information of ICE
ICEberg ID311
Name ICESsu05ZYH33-1 This ICE is derived from experimental literature
FamilyICESa2603
OrganismStreptococcus suis 05ZYH33
Size (bp)88851
GC content [Genome] (%)38.79[41.11]
Insertion siteTTATTTAAGAGTAAC
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000407 (complete ICE sequence in this genome)
Replicon chromosome (2096309 bp, BioProject:17153) [NC_009442]
Genome coordinates872967..961817 
Putative oriT region -
Putative relaxase coordinates: 902433..903638; Locus tag: SSU05_0930;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICESsu05ZYH33-1 is not available.



The graph information of ICESsu05ZYH33-1 components from CP000407
Complete gene list of ICESsu05ZYH33-1 from CP000407
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SSU05_0899868566..869609 [-], 1044hypothetical protein
2SSU05_0900869635..870474 [-], 840Uncharacterized protein conserved in bacteria
3SSU05_0901870548..871882 [-], 1335NAD(FAD)-utilizing enzyme possibly involved in translation
4SSU05_0902872078..872827 [-], 750Predicted hydrolase (HAD superfamily)
5SSU05_0903873012..874223 [-], 1212site-specific recombinase, phage integrase family
6SSU05_0904874234..874461 [-], 228hypothetical protein
7SSU05_0905874740..874961 [-], 222transcriptional regulator, Cro/CI family
8SSU05_0906875685..876392 [-], 708NisK
9SSU05_0907876377..877060 [-], 684NisR
10SSU05_0908877091..877744 [-], 654hypothetical protein
11SSU05_0909877796..878593 [-], 798hypothetical protein
12SSU05_0910878577..879293 [-], 717putative transport ATP-binding protein
13SSU05_0911879314..881536 [-], 2223ABC transporter, NBP/MSD fusion protein
14SSU05_0912881803..882948 [-], 1146putative asparagine synthetase
15SSU05_0913884460..886325 [-], 1866Chromosome segregation ATPase
16SSU05_0914886312..886677 [-], 366unknown protein
17SSU05_0915886677..887252 [-], 576hypothetical protein
18SSU05_0916887407..888303 [+], 897putative Abi-alpha protein
19SSU05_0917888425..889642 [-], 1218Tn916, transposaseIntegrase 
20SSU05_0918889724..889927 [-], 204hypothetical protein
21SSU05_0919890615..891046 [-], 432hypothetical protein
22SSU05_0920891541..891894 [+], 354Tn916, transcriptional regulator, putative
23SSU05_0922892240..894174 [-], 1935Translation elongation factor (GTPases)AR 
24SSU05_0921893067..893219 [+], 153hypothetical protein
25SSU05_0923894536..895468 [-], 933Tn916, hypothetical proteinOrf13_Tn, T4SS component 
26SSU05_0924895465..896466 [-], 1002hypothetical proteinOrf14_Tn, T4SS component 
27SSU05_0925896463..898640 [-], 2178membrane protein, putativeOrf15_Tn, T4SS component 
28SSU05_0926898643..901099 [-], 2457hypothetical proteinOrf16_Tn, T4SS component 
29SSU05_0927901074..901580 [-], 507hypothetical proteinOrf17_Tn, T4SS component 
30SSU05_0928901555..902052 [-], 498hypothetical protein
31SSU05_0929902169..902390 [-], 222hypothetical proteinOrf19_Tn, T4SS component 
32SSU05_0930902433..903638 [-], 1206Tn916, transcriptional regulator, putativeRelaxase, MOBT Family
33SSU05_0931903816..905201 [-], 1386hypothetical proteinOrf21_Tn, T4SS component 
34SSU05_0932905230..905616 [-], 387hypothetical protein
35SSU05_0933905632..905946 [-], 315hypothetical protein
36SSU05_0934907006..908550 [-], 1545DNA helicase
37SSU05_0935908507..910594 [-], 2088hypothetical protein
38SSU05_0936910591..911367 [-], 777Signal recognition particle GTPase
39SSU05_0937911367..911873 [-], 507Predicted transcriptional regulator
40SSU05_0938911913..912266 [-], 354ATPases with chaperone activity, ATP-binding subunit
41SSU05_0939912253..912642 [-], 390Methyl-accepting chemotaxis protein
42SSU05_0940912639..912866 [-], 228hypothetical protein
43SSU05_0941912920..913996 [-], 1077DNA primase (type)
44SSU05_0942914035..914673 [-], 639hypothetical protein
45SSU05_0943916074..916673 [-], 600DNA-binding response regulator, putative
46SSU05_0944916651..917841 [-], 1191possible two-component sensor histidine kinase
47SSU05_0945918568..918852 [-], 285hypothetical protein
48SSU05_0946919557..920471 [-], 915cdd4
49SSU05_0947920443..921546 [-], 1104ABC-type multidrug transport system, ATPase and permease component
50SSU05_0948921488..922372 [-], 885cytolysin B transport protein
51SSU05_0949922525..923637 [-], 1113lantibiotic modifying enzyme
52SSU05_0950923737..923856 [+], 120hypothetical protein
53SSU05_0951923964..924461 [+], 498DNA recombinase, putative
54SSU05_0952924462..924878 [+], 417Recombinase
55SSU05_0953924880..926442 [+], 1563DNA recombinase, putative
56SSU05_0954926585..926809 [+], 225hypothetical protein
57SSU05_0955926824..927693 [+], 870hypothetical protein
58SSU05_0956927674..928408 [+], 735hypothetical protein
59SSU05_0957928441..929304 [+], 864putative aminoglycoside 6-adenylyltansferase
60SSU05_0958929348..929875 [+], 528putative adenine phosphoribosyltransferase
61SSU05_0959930103..931422 [+], 1320putative transposase
62SSU05_0960931611..933008 [-], 1398SalB
63SSU05_0961933916..934215 [-], 300hypothetical protein
64SSU05_0962934286..941110 [-], 6825SNF2 family protein
65SSU05_0963941160..941714 [-], 555hypothetical protein
66SSU05_0964941695..941886 [-], 192hypothetical protein
67SSU05_0965941887..946839 [-], 4953agglutinin receptor
68SSU05_0966946954..947544 [+], 591Predicted transcriptional regulator
69SSU05_0967947541..948386 [+], 846Uncharacterized conserved protein
70SSU05_0968948449..951250 [-], 2802Tn5252, Orf28
71SSU05_0969951252..953603 [-], 2352Type IV secretory pathway, VirB4 component
72SSU05_0970953560..954015 [-], 456hypothetical protein
73SSU05_0971953975..954829 [-], 855ABC-type cobalt transport system, permease component CbiQ and related transporters
74SSU05_0972954848..955069 [-], 222hypothetical protein
75SSU05_0973955109..956926 [-], 1818Type IV secretory pathway, VirD4 component
76SSU05_0974956926..957495 [-], 570hypothetical protein
77SSU05_0975957492..958082 [-], 591protease, putative
78SSU05_0976958079..958318 [-], 240hypothetical protein
79SSU05_0977958321..958710 [-], 390Arsenate reductase and related proteins, glutaredoxin family
80SSU05_0978958715..959143 [-], 429hypothetical protein
81SSU05_0979959127..960482 [-], 1356C-5 cytosine-specific DNA methylase
82SSU05_0980960534..960638 [-], 105hypothetical protein
83SSU05_0981960631..961449 [-], 819hypothetical protein
84SSU05_0982961446..961631 [-], 186hypothetical protein
85SSU05_0983961818..962183 [-], 366Ribosomal protein L7/L12
86SSU05_0984962249..962779 [-], 531Ribosomal protein L10
87SSU05_0985963320..965461 [-], 2142DNA topoisomerase I
88SSU05_0986965515..965652 [-], 138Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake
89SSU05_0987965671..965970 [-], 300Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake
90SSU05_0988965967..966443 [-], 477Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins17Fasta
(1) Huang J; Liang Y; Guo D; Shang K; Ge L; Kashif J; Wang L (2016). Comparative Genomic Analysis of the ICESa2603 Family ICEs and Spread of erm(B)- and tet(O)-Carrying Transferable 89K-Subtype ICEs in Swine and Bovine Isolates in China. Front Microbiol. 7:55. [PudMed:26870017]
(2) Palmieri C; Varaldo PE; Facinelli B (2011). Streptococcus suis, an Emerging Drug-Resistant Animal and Human Pathogen. Front Microbiol. 0.246527778. [PudMed:22275909]
(3) Chen C; Tang J; Dong W; Wang C; Feng Y; Wang J; Zheng F; Pan X; Liu D; Li M; Song Y; Zhu X; Sun H; Feng T; Guo Z; Ju A; Ge J; Dong Y; Sun W; Jiang Y; Wang J; Yan J; Yang H; Wang X; Gao GF; Yang R; Wang J; Yu J (2007). A glimpse of streptococcal toxic shock syndrome from comparative genomics of S. suis 2 Chinese isolates. PLoS One. 2(3):e315. [PudMed:17375201]