ICEberg
I. Information of ICE
ICEberg ID310
Name ICESpsHKU1003-1 This is a putative ICE identified in this study by Blast
FamilyTn916
OrganismStaphylococcus pseudintermedius HKU10-03
Size (bp)18031
GC content [Genome] (%)38.71[37.53]
Insertion siteAT rich regions
FunctionTetracycline resistance
Species that ICE can be transferred to-
Nucleotide SequenceCP002439 (complete ICE sequence in this genome)
Replicon[NC_014925]
Genome coordinates2195642..2213672 
Putative oriT region -
Putative relaxase coordinates: 2209824..2211029; Locus tag: SPSINT_2120;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICESpsHKU1003-1 is not available.



The graph information of ICESpsHKU1003-1 components from CP002439
Complete gene list of ICESpsHKU1003-1 from CP002439
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SPSINT_21042192383..2193777 [+], 1395Sodium/glycine symporter GlyP
2SPSINT_21052194155..2194583 [+], 429General stress protein 26
3SPSINT_21062194854..2194982 [+], 129hypothetical protein
4SPSINT_21072195131..2195694 [+], 564putative Abi-alpha protein
5SPSINT_21082195816..2197033 [-], 1218Tn916 ORF3-like transposon integraseIntegrase 
6SPSINT_21092197115..2197318 [-], 204Tn916 ORF1- like transposon excisionase
7SPSINT_21102198006..2198428 [-], 423Tn916-associated hypothetical protein
8SPSINT_21112198932..2199285 [+], 354Tn916-associated transcriptional regulator
9SPSINT_21122199631..2201550 [-], 1920Tetracycline resistance protein TetM
10SPSINT_21132201927..2202859 [-], 933conserved hypothetical proteinOrf13_Tn, T4SS component 
11SPSINT_21142202856..2203857 [-], 1002lipoprotein, NLP/P60 familyOrf14_Tn, T4SS component 
12SPSINT_21152203854..2206031 [-], 2178hypothetical membrane proteinOrf15_Tn, T4SS component 
13SPSINT_21162206034..2208481 [-], 2448hypothetical proteinOrf16_Tn, T4SS component 
14SPSINT_21172208465..2208857 [-], 393Tn916-associated hypothetical proteinOrf17_Tn, T4SS component 
15SPSINT_21182208946..2209443 [-], 498Antirestriction protein
16SPSINT_21192209560..2209781 [-], 222Conjugation related proteinOrf19_Tn, T4SS component 
17SPSINT_21202209824..2211029 [-], 1206Tn916-associated transcriptional regulatorRelaxase, MOBT Family
18SPSINT_21212211207..2212592 [-], 1386Cell division FtsK/SpoIIIE proteinOrf21_Tn, T4SS component 
19SPSINT_21222212621..2213007 [-], 387hypothetical protein
20SPSINT_21232213023..2213178 [-], 156hypothetical protein
21SPSINT_21242213663..2213908 [+], 246hypothetical protein
22SPSINT_21252214798..2216657 [-], 1860hypothetical ABC transporter
23SPSINT_21262216638..2218431 [-], 1794ABC transporter, ATP-binding/permease protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins16Fasta
Identified as part of this study from CP002439