ICEberg
I. Information of ICE
ICEberg ID305
Name ICESauST398-1 This is a predicted ICE derived from literature
FamilyTn916
OrganismStaphylococcus aureus subsp. aureus ST398
Size (bp)18032
GC content [Genome] (%)38.74[32.92]
Insertion siteAT rich regions
Functiontetracycline resistance
Species that ICE can be transferred to-
Nucleotide SequenceAM990992 (complete ICE sequence in this genome)
Replicon chromosome (2872582 bp, BioProject:29427) [AM990992]
Genome coordinates997771..1015802 
Putative oriT region -
Putative relaxase coordinates: 1011954..1013159; Locus tag: SAPIG0965;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICESauST398-1 is not available.



The graph information of ICESauST398-1 components from AM990992
Complete gene list of ICESauST398-1 from AM990992
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SAPIG0951996062..996964 [+], 903fumarylacetoacetate
2SAPIG0952997291..997680 [+], 390conserved hypothetical protein
3SAPIG0953997945..999162 [-], 1218transposase from transposon (Integrase)Integrase 
4SAPIG0954999244..999447 [-], 204conserved domain protein
5SAPIG09551000135..1000557 [-], 423sigma-70, region 4 family
6SAPIG09561001062..1001415 [+], 354transcriptional regulator, putative
7SAPIG09571001761..1003680 [-], 1920TetM protein
8SAPIG09581004057..1004989 [-], 933conjugative transposon proteinOrf13_Tn, T4SS component 
9SAPIG09591004986..1005987 [-], 1002NLP/P60 family proteinOrf14_Tn, T4SS component 
10SAPIG09601005984..1008161 [-], 2178conjugative transposon membrane proteinOrf15_Tn, T4SS component 
11SAPIG09611008164..1010611 [-], 2448conjugative transposon proteinOrf16_Tn, T4SS component 
12SAPIG09621010595..1010987 [-], 393conjugative transposon membrane proteinOrf17_Tn, T4SS component 
13SAPIG09631011076..1011573 [-], 498conjugative transposon protein
14SAPIG09641011690..1011911 [-], 222conserved domain proteinOrf19_Tn, T4SS component 
15SAPIG09651011954..1013159 [-], 1206transcriptional regulator, Cro/CI familyRelaxase, MOBT Family
16SAPIG09661013337..1014722 [-], 1386ftsk/spoiiie family proteinOrf21_Tn, T4SS component 
17SAPIG09671014751..1015137 [-], 387conjugative transposon protein
18SAPIG09681015153..1015305 [-], 153conjugative transposon protein
19SAPIG09691015836..1016147 [-], 312transposase
20cdr1017038..1018354 [-], 1317CoA-disulfide reductase
21SAPIG09711018406..1019230 [-], 825hydrolase
22SAPIG09721019344..1019652 [+], 309N-6 Adenine-specific DNA methylase YitW
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins16Fasta
(1) Schijffelen MJ; Boel CH; van Strijp JA; Fluit AC (2010). Whole genome analysis of a livestock-associated methicillin-resistant Staphylococcus aureus ST398 isolate from a case of human endocarditis. BMC Genomics. 0.719444444. [PudMed:20546576]