ICEberg
I. Information of ICE
ICEberg ID304
Name ICESga43143-1 This is a predicted ICE derived from literature
FamilyTn916
OrganismStreptococcus gallolyticus subsp. gallolyticus ATCC 43143
Size (bp)18032
GC content [Genome] (%)38.75[37.52]
Insertion siteAT rich regions
Functiontetracycline resistance
Species that ICE can be transferred to-
Nucleotide SequenceAP012053 (complete ICE sequence in this genome)
Replicon[AP012053]
Genome coordinates1643376..1661407 
Putative oriT region -
Putative relaxase coordinates: 1657559..1658764; Locus tag: SGGB_1598;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICESga43143-1 is not available.



The graph information of ICESga43143-1 components from AP012053
Complete gene list of ICESga43143-1 from AP012053
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1pepQ1639310..1640395 [+], 1086X-Pro dipeptidase
2SGGB_15831640429..1640755 [-], 327small multidrug resistance protein
3nudC1640926..1641501 [+], 576NAD+ diphosphatase
4SGGB_15851641553..1643325 [-], 1773predicted lipoprotein
5SGGB_15861643550..1644767 [-], 1218Tn916 ORF2 integraseIntegrase 
6SGGB_15871644849..1645052 [-], 204Tn916 ORF1 excisionase
7SGGB_15881645740..1646162 [-], 423Tn916 ORF7 DNA-binding protein protein
8SGGB_15891646667..1647020 [+], 354Tn916 ORF9 transcriptional regulator, putative
9tetM1647366..1649285 [-], 1920Tn916 ORF11 tetracycline resistance protein
10SGGB_15911649662..1650594 [-], 933Tn916 ORF13 proteinOrf13_Tn, T4SS component 
11SGGB_15921650591..1651592 [-], 1002Tn916 ORF14 extracellular hydrolase/peptidaseOrf14_Tn, T4SS component 
12SGGB_15931651589..1653766 [-], 2178Tn916 ORF15 signal peptide containing proteinOrf15_Tn, T4SS component 
13SGGB_15941653769..1656216 [-], 2448Tn916 ORF16 ATP/GTP-binding proteinOrf16_Tn, T4SS component 
14SGGB_15951656200..1656706 [-], 507Tn916 ORF17 signal peptide containing proteinOrf17_Tn, T4SS component 
15SGGB_15961656681..1657178 [-], 498Tn916 ORF18 antirestriction (ArdA) protein
16SGGB_15971657295..1657516 [-], 222Tn916 ORF19 proteinOrf19_Tn, T4SS component 
17SGGB_15981657559..1658764 [-], 1206Tn916 ORF20 phage replication initiation factor PEPRelaxase, MOBT Family
18SGGB_15991658942..1660327 [-], 1386Tn916 ORF21 FtsK/SpoIIIE family proteinOrf21_Tn, T4SS component 
19SGGB_16001660356..1660742 [-], 387Tn916 ORF22 protein
20SGGB_16011660758..1661072 [-], 315Tn916 ORF23 protein
21SGGB_16021661408..1663177 [-], 1770cell wall surface protein
22bglF21663234..1665144 [-], 1911PTS system, beta-glucosides-specific IIABC component
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins16Fasta
(1) Lin IH; Liu TT; Teng YT; Wu HL; Liu YM; Wu KM; Chang CH; Hsu MT (2011). Sequencing and comparative genome analysis of two pathogenic Streptococcus gallolyticus subspecies: genome plasticity, adaptation and virulence. PLoS One. 6(5):e20519. [PudMed:21633709]