ICEberg
I. Information of ICE
ICEberg ID235
Name PFGI-1 This is a predicted ICE derived from literature
FamilyPAPI-1
OrganismPseudomonas fluorescens Pf-5
Size (bp)115119
GC content [Genome] (%)56.36[63.3]
Insertion sitetRNA-Lys (PFL_4753)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000076 (complete ICE sequence in this genome)
Replicon chromosome (7074893 bp, BioProject:327) [NC_004129]
Genome coordinates5378468..5493586 
Putative oriT region -
Putative relaxase coordinates: 5489951..5491837; Locus tag: PFL_4751;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of PFGI-1 is not available.



The graph information of PFGI-1 components from CP000076
Complete gene list of PFGI-1 from CP000076
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1PFL_46565373886..5376759 [-], 2874pyoverdine synthetase, putative
2PFL_46575376781..5378019 [-], 1239aminotransferase, class III
3PFL_46595379490..5380242 [+], 753conserved hypothetical protein
4PFL_46605380239..5380622 [+], 384hypothetical protein
5PFL_46615381181..5381870 [+], 690conserved hypothetical protein
6PFL_46625381933..5382538 [+], 606gp46
7dnaB5382535..5383884 [+], 1350replicative DNA helicase
8PFL_46645384059..5384577 [+], 519conserved hypothetical protein
9PFL_46655384686..5385801 [+], 1116nucleoid-associated family protein
10PFL_46665386147..5387820 [+], 1674conserved hypothetical protein
11PFL_46675387862..5388488 [+], 627conserved hypothetical protein
12PFL_46685388485..5389765 [+], 1281conserved hypothetical protein
13PFL_46695390321..5391052 [+], 732conserved hypothetical protein
14PFL_46705391049..5391594 [+], 546conserved hypothetical protein
15PFL_46715391609..5392115 [+], 507single-strand binding protein, putative
16topA5393086..5395002 [+], 1917DNA topoisomerase I
17PFL_46735395092..5396972 [+], 1881hypothetical protein
18PFL_46745396984..5398936 [+], 1953helicase, SNF2 family
19PFL_46755399717..5400862 [+], 1146pilL proteinTfc2, T4SS component 
20pilN5400859..5402700 [+], 1842type IV pilus protein, PilN
21PFL_46775402711..5404045 [+], 1335PilO, putative
22PFL_46785404562..5406094 [+], 1533type IV pilus biogenesis protein PilQTraJ_I, T4SS component 
23PFL_46795406087..5407253 [+], 1167integral membrane protein, putative
24pilS5407275..5407790 [+], 516type IVB pilus biosythesis protein PliS
25PFL_46815407796..5408752 [+], 957type IV pilus biosythesis protein
26PFL_46825408742..5409953 [+], 1212type IV prepilin PilV, putative
27PFL_46835409968..5410408 [+], 441pilM protein, putative
28PFL_46845412717..5413166 [+], 450conserved hypothetical protein
29PFL_46855414388..5414708 [+], 321hypothetical protein
30PFL_46865415056..5415187 [+], 132conserved hypothetical protein
31PFL_46875415235..5415528 [-], 294hypothetical protein
32PFL_46885415949..5416203 [+], 255conserved hypothetical protein
33PFL_46895416895..5418334 [+], 1440conserved hypothetical protein
34PFL_46905418420..5420669 [+], 2250conserved hypothetical protein
35PFL_46915420909..5421361 [+], 453ultraviolet light resistance protein A
36PFL_46925421354..5422625 [+], 1272ultraviolet light resistance protein B
37PFL_46935423444..5424187 [+], 744conserved hypothetical proteinTfc3, T4SS component 
38PFL_46945424172..5424723 [+], 552conserved hypothetical proteinTfc4, T4SS component 
39PFL_46955424720..5425226 [+], 507conserved hypothetical proteinTfc5, T4SS component 
40PFL_46965425475..5427691 [+], 2217conserved hypothetical proteinTfc6, T4SS component 
41PFL_46975427701..5428450 [+], 750conserved hypothetical proteinTfc8, T4SS component 
42PFL_46985428460..5429920 [+], 1461conserved hypothetical proteinTraI_F, T4SS component 
43PFL_46995429936..5430238 [+], 303hypothetical protein
44PFL_47005430458..5430811 [+], 354conserved hypothetical protein TIGR01690Tfc9, T4SS component 
45PFL_47015430808..5431047 [+], 240conserved hypothetical protein
46PFL_47025431062..5431400 [+], 339conserved hypothetical proteinTfc10, T4SS component 
47PFL_47035431796..5432440 [+], 645conserved hypothetical proteinTfc12, T4SS component 
48PFL_47045432437..5433348 [+], 912conserved hypothetical proteinTfc13, T4SS component 
49PFL_47055433332..5434828 [+], 1497conserved hypothetical proteinTfc14, T4SS component 
50PFL_47065435245..5438169 [+], 2925lipoprotein, putativeTfc16, T4SS component 
51PFL_47075438166..5438471 [+], 306conserved hypothetical protein
52PFL_47085438468..5439127 [+], 660thioredoxin domain protein, DsbA family
53PFL_47095441688..5442116 [+], 429conserved hypothetical proteinTfc24, T4SS component 
54PFL_47105442113..5443051 [+], 939conserved hypothetical proteinTfc23, T4SS component 
55PFL_47115443111..5444424 [+], 1314conserved hypothetical protein
56PFL_47125444784..5446316 [+], 1533membrane protein, putativeTfc19, T4SS component 
57PFL_47135446848..5447126 [+], 279conserved hypothetical protein
58PFL_47145449040..5449906 [+], 867hydrolase, alpha/beta fold family
59PFL_47155449980..5451563 [-], 1584GGDEF domain protein
60PFL_47165452173..5452583 [+], 411response regulator
61PFL_47175453713..5454210 [-], 498conserved hypothetical protein
62PFL_47185454348..5455277 [-], 930ZIP zinc transporter family protein
63PFL_47195455506..5456390 [-], 885Mn-containing catalase
64PFL_47205456952..5457452 [+], 501CinA domain protein
65PFL_47215457984..5458430 [+], 447conserved hypothetical protein
66PFL_47225458655..5459881 [-], 1227glutathione-dependent formaldehyde dehydrogenase, putative
67PFL_47245462057..5462374 [+], 318conserved hypothetical protein
68PFL_47255462417..5463505 [-], 1089glutamyl aminopeptidase, M42 family
69PFL_47265463522..5464685 [-], 1164Glutamate-cysteine ligase family 2(GCS2) family
70PFL_47275464698..5465678 [-], 981modification methylase, HemK family
71PFL_47285465694..5467064 [-], 1371conserved hypothetical protein
72PFL_47295467276..5467890 [+], 615conserved hypothetical protein
73PFL_47305467980..5468483 [+], 504lipoprotein, putative
74PFL_47315468575..5468952 [+], 378hydrolase, NUDIX family
75cyoD5469413..5469751 [-], 339cytochrome o ubiquinol oxidase, subunit IV
76cyoC5469753..5470367 [-], 615cytochrome o ubiquinol oxidase, subunit III
77cyoB5470370..5472343 [-], 1974cytochrome o ubiquinol oxidase, subunit I
78cyoA5472333..5473244 [-], 912cytochrome o ubiquinol oxidase, subunit II
79PFL_47365474257..5474814 [+], 558hypothetical protein
80PFL_47375475300..5476157 [+], 858oxidoreductase, short chain dehydrogenase/reductase family
81PFL_47385476352..5476867 [-], 516conserved hypothetical protein
82PFL_47395477036..5477593 [+], 558clp protease, putative
83PFL_47405477696..5478376 [+], 681conserved hypothetical protein
84PFL_47415478387..5479724 [+], 1338sodium/hydrogen exchanger family protein
85PFL_47425480448..5481608 [+], 1161glutathione-dependent formaldehyde dehydrogenase, putative
86PFL_47435481629..5482561 [+], 933conserved hypothetical protein
87PFL_47445482558..5483334 [+], 777endonuclease/exonuclease/phosphatase family protein
88PFL_47455483331..5484524 [+], 1194phospholipase family protein
89PFL_47465484934..5485197 [+], 264hypothetical protein
90PFL_47475485205..5485960 [-], 756prolyl oligopeptidase family protein
91PFL_47485485950..5487047 [-], 1098conserved hypothetical protein
92PFL_47495487576..5487755 [+], 180conserved hypothetical protein
93PFL_47505487797..5488909 [-], 1113sensor histidine kinase
94PFL_47515489951..5491837 [+], 1887conserved hypothetical proteinRelaxase, MOBH Family
95PFL_47525491834..5493171 [+], 1338site-specific recombinase, phage integrase familyIntegrase 
96PFL_47545493650..5494351 [-], 702exsB protein
97PFL_47555494353..5495000 [-], 648radical activating enzyme
98PFL_47565495167..5495979 [-], 813conserved hypothetical protein
99pal5495986..5496483 [-], 498peptidoglycan-associated lipoprotein
100PFL_47585496537..5497838 [-], 1302tolB protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins87Fasta
(1) Mavrodi DV; Loper JE; Paulsen IT; Thomashow LS (2009). Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5. BMC Microbiol. 9:08. [PudMed:19144133]