ICEberg
I. Information of ICE
ICEberg ID232
Name ICESsu(BM407)1 This is a predicted ICE derived from literature
FamilyUnclassified
OrganismStreptococcus suis BM407
Size (bp)75717
GC content [Genome] (%)37.81[41.06]
Insertion siteluciferase-like monooxygenase (SSUBM407_0455)
FunctionTetracycline resistance
Species that ICE can be transferred to-
Nucleotide SequenceFM252032 (complete ICE sequence in this genome)
Replicon chromosome (2146229 bp, BioProject:32237) [NC_012926]
Genome coordinates504649..580365 
Putative oriT region -
Putative relaxase coordinates: 549580..550785; Locus tag: SSUBM407_0491;  Family:  MOBT


II. ICE interaction with IME/CIME/

The interaction information of ICESsu(BM407)1 is not available.



The graph information of ICESsu(BM407)1 components from FM252032
Complete gene list of ICESsu(BM407)1 from FM252032
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SSUBM407_0452500726..501883 [+], 1158putative exported protein
2SSUBM407_0453501864..502559 [+], 696ABC transporter ATP-binding protein
3SSUBM407_0454502560..503807 [+], 1248putative permease
4SSUBM407_0455503933..580966 [+], 77034luciferase-like monooxygenase (pseudogene)
5SSUBM407_0456504649..504822 [+], 174hypothetical protein
6SSUBM407_0457504819..505637 [+], 819replication initiator protein A protein
7SSUBM407_0458505786..507141 [+], 1356C-5 cytosine-specific DNA methylase
8SSUBM407_0459507125..507553 [+], 429hypothetical protein
9SSUBM407_0460507564..507947 [+], 384hypothetical protein
10SSUBM407_0461507950..508189 [+], 240hypothetical protein
11SSUBM407_0462508192..508776 [+], 585CAAX amino terminal protease family protein
12SSUBM407_0463508854..509342 [+], 489hypothetical protein
13SSUBM407_0464509342..511159 [+], 1818putative conjugal transfer protein TraG
14SSUBM407_0465511177..511419 [+], 243putative membrane protein
15SSUBM407_0466511438..512292 [+], 855putative TrbL/VirB6 plasmid conjugal transfer protein
16SSUBM407_0467512354..512707 [+], 354putative membrane protein
17SSUBM407_0468512685..515015 [+], 2331hypothetical proteinPrgJ, T4SS component 
18SSUBM407_0469515017..517818 [+], 2802hypothetical proteinPrgK, T4SS component 
19SSUBM407_0470518157..518792 [+], 636hypothetical protein
20SSUBM407_0471518952..523847 [+], 4896putative glucan-binding surface-anchored proteinPrgB, T4SS component 
21SSUBM407_0471a523848..524039 [+], 192hypothetical protein
22SSUBM407_0472524023..524574 [+], 552hypothetical protein
23SSUBM407_0473524624..531469 [+], 6846hypothetical protein
24SSUBM407_0474531540..531839 [+], 300hypothetical protein
25SSUBM407_0475531853..532152 [+], 300putative membrane protein
26SSUBM407_0476532197..533084 [-], 888integraseIntegrase 
27SSUBM407_0477533176..534126 [+], 951putative D-alanine--D-alanine ligase
28SSUBM407_0478534107..535402 [-], 1296hypothetical protein
29SSUBM407_0479535571..536788 [-], 1218integrase
30SSUBM407_0479a536870..537073 [-], 204excisionase
31SSUBM407_0480537534..537764 [-], 231hypothetical protein
32SSUBM407_0481537761..538183 [-], 423putative DNA-binding protein
33SSUBM407_0482538688..539041 [+], 354DNA-binding protein
34tetM1539387..541306 [-], 1920tetracycline resistance protein TetM 1
35SSUBM407_0484541683..542615 [-], 933putative membrane proteinOrf13_Tn, T4SS component 
36SSUBM407_0485542612..543613 [-], 1002putative exported proteinOrf14_Tn, T4SS component 
37SSUBM407_0486543610..545787 [-], 2178putative membrane proteinOrf15_Tn, T4SS component 
38SSUBM407_0487545790..548237 [-], 2448hypothetical proteinOrf16_Tn, T4SS component 
39SSUBM407_0488548221..548727 [-], 507putative membrane proteinOrf17_Tn, T4SS component 
40SSUBM407_0489548702..549199 [-], 498antirestriction protein
41SSUBM407_0490549316..549537 [-], 222putative membrane proteinOrf19_Tn, T4SS component 
42SSUBM407_0491549580..550785 [-], 1206replication initiation factorRelaxase, MOBT Family
43SSUBM407_0492550963..552348 [-], 1386FtsK/SpoIIIE family proteinOrf21_Tn, T4SS component 
44SSUBM407_0493552377..552763 [-], 387hypothetical protein
45SSUBM407_0494552779..553093 [-], 315hypothetical protein
46SSUBM407_0495553409..554452 [-], 1044hypothetical protein
47SSUBM407_0496554587..555225 [+], 639putative exported protein
48SSUBM407_0497555264..556340 [+], 1077DNA primase
49SSUBM407_0498556394..556621 [+], 228hypothetical protein
50SSUBM407_0499556618..557007 [+], 390hypothetical protein
51SSUBM407_0500556997..557353 [+], 357hypothetical protein
52SSUBM407_0501557362..557670 [-], 309hypothetical protein
53SSUBM407_0502557657..558007 [-], 351hypothetical protein
54SSUBM407_0503558004..559419 [-], 1416UmuC-like DNA-repair protein
55SSUBM407_0504559562..560254 [-], 693putative DNA-binding protein
56SSUBM407_0505561071..561250 [+], 180bacteriocin
57SSUBM407_0506561888..562247 [+], 360hypothetical protein
58SSUBM407_0507562257..562622 [+], 366putative mobilisation protein
59SSUBM407_0508562609..564474 [+], 1866puative relaxase protein
60SSUBM407_0509564518..565222 [-], 705haloacid dehalogenase-like hydrolase
61lacR2565231..565992 [-], 762lactose phosphotransferase system repressor 2
62glkA2566172..567122 [+], 951glucokinase 2
63lacA2567358..567783 [+], 426galactose-6-phosphate isomerase subunit LacA 2
64lacB2567817..568332 [+], 516galactose-6-phosphate isomerase subunit LacB 2
65lacC2568344..569276 [+], 933tagatose-6-phosphate kinase 2
66lacD2569279..570259 [+], 981tagatose 1,6-diphosphate aldolase 2
67lacF2570287..570604 [+], 318lactose-specific phosphotransferase enzyme IIA component 2
68lacE2570604..572298 [+], 1695PTS system lactose-specific EIICB component 2
69lacG2572364..573770 [+], 14076-phospho-beta-galactosidase 2
70lacX2573858..574754 [+], 897protein LacX 2
71SSUBM407_0520575001..575231 [+], 231putative DNA-binding protein
72SSUBM407_0521575492..575632 [+], 141hypothetical protein
73SSUBM407_0522575731..577305 [+], 1575site-specific recombinase
74SSUBM407_0523577305..578924 [+], 1620site-specific recombinase
75SSUBM407_0524578917..580365 [+], 1449site-specific recombinase
76SSUBM407_0455503933..580966 [+], 77034luciferase-like monooxygenase (pseudogene)
77SSUBM407_0525581166..581402 [-], 237hypothetical protein
78lysS581554..583044 [-], 1491lysyl-tRNA synthetase
79SSUBM407_0527583147..583773 [-], 627phosphoglycerate mutase family protein
80SSUBM407_0528583776..584258 [-], 483conserved hypothetical protein
81SSUBM407_0529584258..585100 [-], 843putative membrane protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins71Fasta
(1) Palmieri C; Varaldo PE; Facinelli B (2011). Streptococcus suis, an Emerging Drug-Resistant Animal and Human Pathogen. Front Microbiol. 0.246527778. [PudMed:22275909]
(2) Holden MT; Hauser H; Sanders M; Ngo TH; Cherevach I; Cronin A; Goodhead I; Mungall K; Quail MA; Price C; Rabbinowitsch E; Sharp S; Croucher NJ; Chieu TB; Mai NT; Diep TS; Chinh NT; Kehoe M; Leigh JA; Ward PN; Dowson CG; Whatmore AM; Chanter N; Iversen P; Gottschalk M; Slater JD; Smith HE; Spratt BG; Xu J; Ye C; Bentley S; Barrell BG; Schultsz C; Maskell DJ; Parkhill J (2009). Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis. PLoS One. 4(7):e6072. [PudMed:19603075]