ICEberg
I. Information of ICE
ICEberg ID226
Name ICEA(5632)-III This ICE is derived from experimental literature
FamilyICEA5632
OrganismMycoplasma agalactiae 5632
Size (bp)27235
GC content [Genome] (%)27.37[29.62]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceFP671138 (complete ICE sequence in this genome)
Replicon-
Genome coordinates560640..587874 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEA(5632)-III is not available.



The graph information of ICEA(5632)-III components from FP671138
Complete gene list of ICEA(5632)-III from FP671138
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1MAGa4820556248..557276 [+], 1029Transposase
2MAGa4840557703..560441 [+], 2739Cation transporting P type ATPase
3MAGa4850560640..561434 [+], 795CDS1
4MAGa4860562674..563687 [+], 1014CDSA
5MAGa4870563693..564097 [+], 405CDS12
6MAGa4880564113..564778 [+], 666CDS11
7MAGa4890564815..565267 [+], 453CDSB
8MAGa4900565356..565916 [+], 561CDSC
9MAGa4910565969..566622 [+], 654CDSD
10MAGa4920566717..568729 [+], 2013CDS5T4CP 
11MAGa4930568779..569759 [+], 981CDS7
12MAGa4940569908..570162 [+], 255CDS13
13MAGa4950570165..570530 [+], 366CDS15
14MAGa4960570535..571608 [+], 1074CDS16
15MAGa4965571941..572198 [+], 258Pseudogen of CDS27 (C terminal part)
16MAGa4980572185..574971 [+], 2787CDS17
17MAGa4990574977..579530 [+], 4554CDS19
18MAGa5000579905..580357 [+], 453CDSE
19MAGa5010580675..582249 [+], 1575CDS14
20MAGa5020582375..583637 [-], 1263CDSF
21MAGa5030583808..584161 [-], 354Hypothetical protein
22MAGa5040584252..585091 [-], 840CDSG
23MAGa5050585282..585953 [-], 672CDSH
24MAGa5060586738..587874 [+], 1137CDS22Integrase 
25MAGa5070588199..590064 [+], 1866ABC transporter, permease protein
26MAGa5080590067..590771 [+], 705ABC transporter, ATP binding protein
27MAGa5090590847..591983 [+], 1137Conserved hypothetical protein
28MAGa5100591973..592863 [+], 891Conserved hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins21Fasta
(1) Dordet Frisoni E; Marenda MS; Sagne E; Nouvel LX; Guerillot R; Glaser P; Blanchard A; Tardy F; Sirand-Pugnet P; Baranowski E; Citti C (2013). ICEA of Mycoplasma agalactiae: a new family of self-transmissible integrative elements that confers conjugative properties to the recipient strain. Mol Microbiol. 89(6):1226-39. [PudMed:23888872]
(2) Nouvel LX; Sirand-Pugnet P; Marenda MS; Sagne E; Barbe V; Mangenot S; Schenowitz C; Jacob D; Barre A; Claverol S; Blanchard A; Citti C (2010). Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity. BMC Genomics. 0.518055556. [PudMed:20122262]