ICEberg
I. Information of ICE
ICEberg ID225
Name ICEA(5632)-II This ICE is derived from experimental literature
FamilyICEA5632
OrganismMycoplasma agalactiae 5632
Size (bp)27171
GC content [Genome] (%)27.39[29.62]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceFP671138 (complete ICE sequence in this genome)
Replicon-
Genome coordinates343591..370761 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEA(5632)-II is not available.



The graph information of ICEA(5632)-II components from FP671138
Complete gene list of ICEA(5632)-II from FP671138
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1MAGa2960338596..340806 [+], 2211Putative transmembrane protein
2MAGa2970340838..343414 [+], 2577Conserved hypothetical protein, predictedlipoprotein
3MAGa2980343591..344385 [+], 795CDS1
4MAGa2990345625..346638 [+], 1014CDSA
5MAGa3000346644..347048 [+], 405CDS12
6MAGa3010347064..347729 [+], 666CDS11
7MAGa3030347766..348218 [+], 453CDSB
8MAGa3040348307..348867 [+], 561CDSC
9MAGa3050348920..349573 [+], 654CDSD
10MAGa3060349668..351680 [+], 2013CDS5T4CP 
11MAGa3070351730..352710 [+], 981CDS7
12MAGa3080352859..353113 [+], 255CDS13
13MAGa3090353116..353481 [+], 366CDS15
14MAGa3100353486..354109 [+], 624CDS16 N terminal part
15MAGa3110354073..354561 [+], 489C treminal part of CDS16 Previouslycharacterized CDS (tr Q1IH56); Marenda M., Barbe V.,Gourgues G., Mangenot S., Sagne E., Citti C., A newintegrative conjugative element occurs in Mycoplasmaagalactiae as chromosomal and free circular forms. J.Bacteriol. 188:4137 4141(2006).)
16MAGa3120354708..355148 [+], 441CDS27
17MAGa3130355135..357921 [+], 2787CDS17
18MAGa3140357927..362480 [+], 4554CDS19
19MAGa3150362855..363307 [+], 453CDSE
20MAGa3160363625..365199 [+], 1575CDS14
21MAGa3170365325..366587 [-], 1263CDSF
22MAGa3180366758..367111 [-], 354Hypothetical protein
23MAGa3190367202..368041 [-], 840CDSG
24MAGa3200368232..368903 [-], 672CDSH
25MAGa3210368890..369084 [-], 195-
26MAGa3220369688..370761 [+], 1074CDS22Integrase 
27MAGa3230371003..373219 [+], 2217Conserved hypothetical protein, predictedtransmembrane protein
28MAGa3240373427..375715 [+], 2289Putative transmembrane protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins24Fasta
(1) Dordet Frisoni E; Marenda MS; Sagne E; Nouvel LX; Guerillot R; Glaser P; Blanchard A; Tardy F; Sirand-Pugnet P; Baranowski E; Citti C (2013). ICEA of Mycoplasma agalactiae: a new family of self-transmissible integrative elements that confers conjugative properties to the recipient strain. Mol Microbiol. 89(6):1226-39. [PudMed:23888872]
(2) Nouvel LX; Sirand-Pugnet P; Marenda MS; Sagne E; Barbe V; Mangenot S; Schenowitz C; Jacob D; Barre A; Claverol S; Blanchard A; Citti C (2010). Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity. BMC Genomics. 0.518055556. [PudMed:20122262]