ICEberg
I. Information of ICE
ICEberg ID223
Name ICEMmc-GM12 This is a predicted ICE derived from literature
FamilyICEM
OrganismMycoplasma mycoides subsp. capri str. GM12 transgenic clone deltatypeIIIres
Size (bp)29580
GC content [Genome] (%)23.7[23.92]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP001668 (complete ICE sequence in this genome)
Replicon-
Genome coordinates670961..700540 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEMmc-GM12 is not available.



The graph information of ICEMmc-GM12 components from CP001668
Complete gene list of ICEMmc-GM12 from CP001668
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1MMCAP2_0551668140..670644 [+], 2505putative liporotein
2MMCAP2_0552670961..671749 [+], 789conserved hypothetical integrative conjugal element protein
3MMCAP2_0553672018..673259 [+], 1242conserved hypothetical integrative conjugal element protein
4MMCAP2_0554673432..674265 [+], 834C-5 cytosine-specific DNA methylase
5MMCAP2_0555674294..676309 [+], 2016membrane protein, putative (TraD/TraG family)T4CP 
6MMCAP2_0556676325..677281 [+], 957conserved hypothetical integrative conjugal element protein
7MMCAP2_0557677265..678182 [+], 918conserved hypothetical integrative conjugal element protein
8MMCAP2_0558678197..678613 [+], 417single-strand binding family protein
9MMCAP2_0559678878..680068 [+], 1191conserved hypothetical integrative conjugal element protein
10MMCAP2_0560680306..681838 [+], 1533putative liporotein
11MMCAP2_0561681840..682031 [+], 192conserved hypothetical integrative conjugal element protein
12MMCAP2_0562682128..682358 [+], 231conserved hypothetical integrative conjugal element protein
13MMCAP2_0563682386..685109 [+], 2724putative membrane protein
14MMCAP2_0564685216..685401 [+], 186conserved hypothetical integrative conjugal element protein
15MMCAP2_0565685491..685868 [+], 378conserved hypothetical integrative conjugal element protein
16MMCAP2_0567687822..690665 [+], 2844putative membrane protein
17MMCAP2_0568690678..691343 [+], 666conserved hypothetical integrative conjugal element protein
18MMCAP2_0569691390..696357 [+], 4968putative membrane protein
19MMCAP2_0570696813..697559 [+], 747conserved hypothetical integrative conjugal element protein
20MMCAP2_0571697755..698120 [+], 366conserved hypothetical integrative conjugal element protein
21MMCAP2_0572698344..699258 [+], 915CobQ/CobB/MinD/ParA nucleotide binding domain, putative
22MMCAP2_0573699308..700540 [+], 1233conserved hypothetical integrative conjugal element protein
23MMCAP2_0574701127..703667 [+], 2541putative liporotein
24atpD_1703723..705102 [-], 1380ATP synthase F1, beta subunit
 
flank Flanking regions
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins21Fasta
(1) Thiaucourt F; Manso-Silvan L; Salah W; Barbe V; Vacherie B; Jacob D; Breton M; Dupuy V; Lomenech AM; Blanchard A; Sirand-Pugnet P (2011). Mycoplasma mycoides, from "mycoides Small Colony" to "capri". A microevolutionary perspective. BMC Genomics. 0.579166667. [PudMed:21324191]