ICEberg
I. Information of ICE
ICEberg ID222
Name ICE-GI6 This ICE is derived from experimental literature
FamilyICEclc
OrganismBordetella petrii DSM 12804
Size (bp)159097
GC content [Genome] (%)61.15[65.48]
Insertion sitetRNA-Gly (tRNA-44)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAM902716 (complete ICE sequence in this genome)
Replicon chromosome (5287950 bp, BioProject:28135) [NC_010170]
Genome coordinates4417743..4576839 
Putative oriT region -
Putative relaxase coordinates: 4515132..4516985; Locus tag: Bpet4254;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICE-GI6 is not available.



The graph information of ICE-GI6 components from AM902716
Complete gene list of ICE-GI6 from AM902716
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1pntA24412947..4414566 [+], 1620NAD(P) transhydrogenase subunit alpha
2pntB24414595..4416010 [+], 1416NAD(P) transhydrogenase subunit beta
3Bpet41724416066..4417025 [-], 960transcriptional regulator, LysR-family
4Bpet41734417207..4417665 [+], 459transcriptional regulator, AsnC family
5Bpet41744417928..4418830 [-], 903transcriptional regulator, LysR-family
6Bpet41754419232..4420140 [+], 909-
7Bpet41764420153..4423053 [+], 2901DNA-dependent ATPase, SNF2 family protein
8Bpet41774423067..4423618 [+], 552hypothetical protein
9Bpet41784423618..4423887 [+], 270-
10Bpet41794424048..4425028 [+], 981ISPssy, transposase
11lpsJ24425176..4425814 [+], 6393-oxoacid CoA-transferase subunit B
12fadA94425859..4427028 [+], 1170-
13Bpet41824427191..4427580 [-], 390transposase IS4 family
14Bpet41834427550..4427957 [-], 408putative transposase
15Bpet41844428521..4429150 [-], 630Putative HTH-type transcriptional regulator, AcrR-family
16Bpet41854429152..4429826 [-], 675transcriptional regulator, TetR-family
17Bpet41864429847..4430698 [-], 852conserved hypothetical protein
18cusC24430706..4432169 [-], 1464probable outer membrane efflux protein
19Bpet41884432166..4435297 [-], 3132AcrB/AcrD/AcrF family proteinAR 
20Bpet41894435307..4436482 [-], 1176multidrug resistance protein
21Bpet41904436701..4437291 [+], 591transcriptional regulator, TetR family
22Bpet41914437349..4438071 [+], 723transcriptional regulator, TetR-family
23Bpet41924438117..4438551 [-], 435hypothetical protein predicted by Glimmer/Critica
24Bpet41934438618..4439022 [-], 405Conserved secreted protein, UPF0065 family
25Bpet41944439208..4440581 [-], 1374hypothetical protein
26Bpet41954440617..4441396 [-], 7802-hydroxymuconic semialdehyde hydrolase
27Bpet41964441393..4442298 [-], 906fumarylacetoacetate hydrolase family protein
28Bpet41974442401..4443177 [+], 777transcriptional regulator, GntR-family
29Bpet41984443235..4444233 [+], 999aldo/keto reductase
30Bpet41994444256..4445074 [-], 819putative exported protein
31Bpet42004445138..4445866 [-], 729transposase IS4 family
32Bpetpseudo_154445946..4447394 [-], 1449pseudogeneTfc6, T4SS component 
33Bpet42034447180..4447851 [-], 672conserved hypothetical proteinTfc6, T4SS component 
34Bpet42044447856..4448401 [-], 546conserved hypothetical proteinTfc4, T4SS component 
35Bpet42054448383..4448748 [-], 366conserved proteinTfc3, T4SS component 
36Bpet42064448745..4450142 [-], 1398amine oxidase, flavin-containing
37fhuC`4450350..4450571 [-], 222pseudogene
38fhuC`4450541..4451134 [-], 594pseudogene
39Bpet42074451137..4452837 [-], 1701ABC transporter ATP-binding protein
40fhuB4452834..4454837 [-], 2004ferrichrome transport protein FhuB precursor
41fhuD4454840..4455850 [-], 1011ABC transporter, substrate binding protein
42Bpet42104455865..4458099 [-], 2235TonB-dependent outer membrane receptor
43Bpet42114458335..4459066 [+], 732transcriptional regulator, AraC family
44Bpet42124459087..4462053 [-], 2967-
45ssb54462263..4462775 [-], 513-
46Bpet42144463373..4465010 [-], 1638conserved hypothetical protein
47Bpet42154465003..4465263 [-], 261conserved hypothetical protein
48parA44465247..4465990 [-], 744hypothetical protein
49Bpet42174466229..4466879 [+], 651transcriptional regulator, TetR family
50Bpet42184466979..4467413 [+], 435hypothetical protein
51Bpet42194467479..4468015 [-], 537transcriptional regulator, TetR family
52Bpet42204468177..4469214 [-], 1038putative octaprenyl-diphosphate synthase
53Bpet42214469495..4469962 [+], 468putative transcriptional regulator, MarR family
54Bpet42224470620..4471867 [-], 1248putative drug resistance transporter, Bcr/CflA family
55rob4472393..4473199 [-], 807transcriptional regulator, AraC family
56Bpet42244473552..4474169 [-], 618transcriptional regulator, LysR-family
57Bpet42254474277..4474561 [+], 285conserved hypothetical protein, DNA-binding
58Bpet42264474588..4475481 [-], 894transcriptional regulator, LysR family
59Bpet42274476812..4477657 [-], 846conserved hypothetical protein
60Bpet42284477751..4479223 [-], 1473probable outer membrane efflux protein
61mexD4479241..4479891 [-], 651putative efflux system transmembrane protein
62Bpet42304480017..4480658 [-], 642transcriptional regulator, LysR family
63Bpet42314480780..4481085 [+], 306predicted transcriptional regulator
64Bpet42324481123..4482013 [-], 891transcriptional regulator, LysR family
65Bpet42334482293..4483201 [+], 909-
66Bpet42344483214..4486447 [+], 3234DNA-dependent ATPase, SNF2 family protein
67Bpet42354486444..4487259 [+], 816hypothetical protein
68mod4487301..4489199 [+], 1899type III restriction system methylase
69res4489211..4492216 [+], 3006type III restriction enzyme
70Bpet42384492297..4493031 [+], 735hypothetical protein
71Bpet42394493031..4493300 [+], 270hypothetical protein predicted by Glimmer/Critica
72Bpet42404493317..4494267 [+], 951-
73Bpet42414494253..4494795 [-], 543putative transposase
74Bpet42424495314..4495805 [-], 492putative transposase
75Bpet42434495912..4496289 [+], 378hypothetical protein predicted by Glimmer/Critica
76Bpet42444496286..4496630 [+], 345hypothetical protein predicted by Glimmer/Critica
77Bpet42454496850..4499525 [+], 2676hypothetical conserved protein
78Bpet42464499522..4501285 [+], 1764conserved hypothetical protein
79Bpet42474501282..4501770 [+], 489hypothetical protein predicted by Glimmer/Critica
80Bpet42484501767..4502483 [+], 717conserved hypothetical protein
81Bpet42494502476..4503819 [+], 1344putative protein kinase
82Bpet42504503816..4507196 [+], 3381hypothetical protein
83Bpet42514507190..4509130 [+], 1941hypothetical protein predicted by Glimmer/Critica
84Bpet42524509133..4511769 [+], 2637conserved hypothetical protein
85Bpet42534512615..4515101 [+], 2487hypothetical protein
86Bpet42544515132..4516985 [-], 1854putative helicaseRelaxase, MOBH Family
87Bpet42554517283..4517600 [+], 318probable suppressor protein
88Bpet42564517600..4518058 [+], 459hypothetical protein
89Bpet42574518086..4518445 [+], 360putative membrane protein
90Bpet42584518452..4519975 [-], 1524conserved Hypothetical proteinTfc19, T4SS component 
91Bpet42594519991..4520362 [-], 372hypothetical protein predicted by Glimmer/Critica
92Bpet42604520359..4521765 [-], 1407conserved hypothetical proteinTfc22, T4SS component 
93Bpet42614521776..4522723 [-], 948conserved hypothetical proteinTfc23, T4SS component 
94Bpet42624522720..4523166 [-], 447putative secreted proteinTfc24, T4SS component 
95radC54523331..4523825 [-], 495DNA repair protein radC homolog
96Bpet42644524004..4524741 [-], 738putative secreted protein
97Bpet42654524784..4527693 [-], 2910conserved hypothetical proteinTfc16, T4SS component 
98Bpet42664527693..4528142 [-], 450putative lipoproteinTfc15, T4SS component 
99Bpet42674528123..4529532 [-], 1410putative exported proteinTfc14, T4SS component 
100Bpet42684529522..4530460 [-], 939putative secreted proteinTfc13, T4SS component 
101Bpet42694530457..4531149 [-], 693conserved hypothetical proteinTfc12, T4SS component 
102Bpet42704531146..4531556 [-], 411conserved hypothetical proteinTfc11, T4SS component 
103Bpet42714531570..4531929 [-], 360putative membrane proteinTfc10, T4SS component 
104Bpet42724531946..4532179 [-], 234putative membrane protein
105Bpet42734532176..4532559 [-], 384putative membrane proteinTfc9, T4SS component 
106Bpet42744532658..4533419 [-], 762putative membrane proteinTfc8, T4SS component 
107Bpet42754533416..4535143 [-], 1728hypothetical proteinTfc6, T4SS component 
108Bpet42764534929..4535600 [-], 672hypothetical proteinTfc6, T4SS component 
109Bpet42774535605..4536153 [-], 549conserved exported proteinTfc5, T4SS component 
110Bpet42784536150..4536755 [-], 606conserved exported proteinTfc4, T4SS component 
111Bpet42794536737..4537474 [-], 738conserved protein, putatively exportedTfc3, T4SS component 
112Bpet42804537489..4538130 [-], 642putative membrane proteinTfc2, T4SS component 
113Bpet42814538127..4538705 [-], 579putative lipoproteinTfc2, T4SS component 
114Bpet42824538848..4540500 [-], 1653hypothetical protein predicted by Glimmer/Critica
115Bpet42834540566..4542368 [-], 1803conserved hypothetical protein
116Bpet42844542541..4544475 [-], 1935conserved plasmid related protein
117ltrA14544616..4546436 [-], 1821Mobile mitochondrial group II intron of COX1 which is involved in pre-mRNA splicing and in deletion of introns from mitochondrial DNA
118Bpet42864547019..4547357 [-], 339plasmid-related protein
119Bpet42874547493..4547798 [-], 306hypothetical protein predicted by Glimmer/Critica
120Bpet42884547868..4548179 [-], 312hypothetical protein
121Bpet42894548282..4549307 [-], 1026hypothetical protein predicted by Glimmer/Critica
122Bpet42904549438..4551153 [-], 1716reverse transcriptase
123tnp254551433..4551720 [+], 288transposase
124Bpet42924551717..4552607 [+], 891probable transposaseIntegrase 
125Bpet42934553166..4553816 [-], 651hypothetical protein
126Bpet42944554103..4555821 [-], 1719reverse transcriptase
127Bpet42954556423..4556722 [-], 300conserved hypothetical protein
128Bpet42964556817..4557515 [-], 699conserved hypothetical protein
129Bpet42974557611..4558438 [-], 828Hypothetical protein (o273)
130Bpet42984558589..4559503 [-], 915hypothetical protein
131Bpet42994559882..4560694 [-], 813conserved hypothetical protein
132Bpet43004560975..4561253 [-], 279hypothetical protein predicted by Glimmer/Critica
133Bpet43014561348..4562085 [-], 738conserved hypothetical protein
134Bpet43024562298..4562690 [-], 393conserved hypothetical protein
135Bpet43034562712..4562924 [-], 213hypothetical protein
136Bpet43044563253..4563498 [-], 246conserved hypothetical protein
137topB44564022..4566034 [-], 2013DNA topoisomerase III
138ssb64566304..4566744 [-], 441-
139Bpet43074566818..4567345 [-], 528conserved hypothetical protein
140Bpet43084567342..4568142 [-], 801conserved hypothetical protein
141Bpet43094568460..4569704 [-], 1245conserved hypothetical protein
142Bpet43104569708..4570268 [-], 561conserved hypothetical protein
143Bpet43114570284..4571876 [-], 1593conserved hypothetical protein
144Bpet43124571869..4572117 [-], 249conserved hypothetical protein
145parA54572101..4572976 [-], 876chromosome partitioning protein
146alpA24573019..4573231 [-], 213-
147Bpet43154573350..4574105 [-], 756conserved hypothetical protein
148intB134574670..4576598 [-], 1929phage-related integrase
149bug924577051..4578043 [-], 993putative secreted protein
150Bpet43184578108..4579058 [-], 951hydroxymethylglutaryl-CoA lyase
151Bpet43194579055..4580248 [-], 1194-
152Bpet43204580366..4581265 [-], 900transcriptional regulator, LysR-family
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins143Fasta
(1) Lechner M; Schmitt K; Bauer S; Hot D; Hubans C; Levillain E; Locht C; Lemoine Y; Gross R (2009). Genomic island excisions in Bordetella petrii. BMC Microbiol. 0.472916667. [PudMed:19615092] experimental
 
experimental experimental literature