ICEberg
I. Information of ICE
ICEberg ID221
Name ICE-GI3 This ICE is derived from experimental literature
FamilyICEclc
OrganismBordetella petrii DSM 12804
Size (bp)102111
GC content [Genome] (%)63.02[65.48]
Insertion sitetRNA-Gly (tRNA-11)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAM902716 (complete ICE sequence in this genome)
Replicon chromosome (5287950 bp, BioProject:28135) [NC_010170]
Genome coordinates1493541..1595651 
Putative oriT region -
Putative relaxase coordinates: 1557786..1559633; Locus tag: Bpet1509;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICE-GI3 is not available.



The graph information of ICE-GI3 components from AM902716
Complete gene list of ICE-GI3 from AM902716
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1Bpet14351489427..1490008 [+], 582transcriptional regulator, TetR-family
2Bpet14361490093..1491262 [+], 1170putative Transmembrane efflux protein of the MFS type
3intB131491479..1493314 [-], 1836phage-related integrase
4Bpet14381494345..1495100 [+], 756conserved hypothetical protein
5alpA31495220..1495432 [+], 213predicted transcriptional regulator (phage-related)
6parA31495476..1496351 [+], 876hypothetical protein
7Bpet14411496335..1496592 [+], 258conserved hypothetical protein
8Bpet14421496585..1498237 [+], 1653conserved hypothetical protein
9Bpet14431498253..1498813 [+], 561conserved hypothetical protein
10Bpet14441498817..1500061 [+], 1245conserved hypothetical protein
11Bpet14451500392..1501171 [+], 780conserved hypothetical protein
12Bpet14461501168..1501695 [+], 528conserved hypothetical protein
13ssb31501769..1502209 [+], 441-
14topB31502488..1504500 [+], 2013DNA topoisomerase III
15Bpet14491505037..1505642 [+], 606putative DNA-cytosine methyltransferase
16Bpet14501505848..1506987 [+], 1140integrase/recombinase
17Bpet14511506987..1507982 [+], 996integrase/recombinase
18Bpet14521508109..1508999 [-], 891probable transposase
19tnp81508996..1509283 [-], 288transposase
20int11509356..1510309 [+], 954putative integrase/recombinaseIntegrase 
21Bpet14551510428..1511417 [+], 990DNA-cytosine methyltransferase
22Bpet14561511662..1512219 [+], 558conserved hypothetical protein
23Bpet14571512376..1512762 [+], 387conserved hypothetical protein
24Bpet14581512784..1513176 [+], 393conserved hypothetical protein
25Bpet14591513349..1514035 [+], 687conserved hypothetical protein
26Bpet14601514115..1514852 [+], 738conserved hypothetical protein
27Bpet14611514950..1515228 [+], 279conserved hypothetical protein
28Bpet14621515302..1516243 [+], 942conserved hypothetical protein
29Bpet14631516254..1517144 [-], 891probable transposase
30tnp91517141..1517428 [-], 288transposase
31Bpet14651517756..1518109 [+], 354conserved hypothetical protein
32Bpet14661518255..1519097 [+], 843conserved hypothetical protein
33Bpet14671519151..1519294 [-], 144Potential Pseudomonas putida clc transposon
34Bpet14681519875..1520792 [+], 918hypothetical protein
35Bpet14691520850..1521539 [+], 690conserved hypothetical protein
36Bpet14701521635..1521967 [+], 333conserved hypothetical protein
37Bpet14711522064..1522471 [+], 408-
38Bpet14721522488..1522748 [+], 261hypothetical protein predicted by Glimmer/Critica
39Bpet14731522825..1523475 [+], 651conserved hypothetical protein
40Bpet14741523540..1524649 [+], 1110conserved hypothetical protein
41ltrA21525670..1527490 [+], 1821Mobile mitochondrial group II intron of COX1 which is involved in pre-mRNA splicing and in deletion of introns from mitochondrial DNA
42Bpet14761527718..1529565 [+], 1848conserved plasmid related protein
43Bpet14771529679..1530548 [+], 870hypothetical protein predicted by Glimmer/Critica
44Bpet14781530709..1531308 [+], 600putative secreted proteinTfc2, T4SS component 
45Bpet14791531305..1531955 [+], 651putative membrane proteinTfc2, T4SS component 
46Bpet14801531970..1532689 [+], 720conserved protein, putatively exportedTfc3, T4SS component 
47Bpet14811532671..1533261 [+], 591conserved exported proteinTfc4, T4SS component 
48Bpet14821533258..1533806 [+], 549conserved hypothetical proteinTfc5, T4SS component 
49Bpet14831533811..1535997 [+], 2187putative plasmid-transfer-proteinTfc6, T4SS component 
50Bpet14841535994..1536743 [+], 750putative Membrane proteinTfc8, T4SS component 
51Bpet14851536780..1537184 [-], 405conserved hypothetical protein
52Bpet14861537370..1537753 [+], 384putative membrane proteinTfc9, T4SS component 
53Bpet14871537750..1537983 [+], 234conserved hypothetical protein
54Bpet14881537994..1538359 [+], 366conserved hypothetical proteinTfc10, T4SS component 
55Bpet14891538372..1538782 [+], 411putative membrane proteinTfc11, T4SS component 
56Bpet14901538779..1539471 [+], 693conserved hypothetical proteinTfc12, T4SS component 
57Bpet14911539468..1540400 [+], 933putative secreted proteinTfc13, T4SS component 
58Bpet14921540390..1541808 [+], 1419putative exported proteinTfc14, T4SS component 
59Bpet14931541789..1542229 [+], 441putative lipoproteinTfc15, T4SS component 
60bp050705_PS_021542229..1546381 [+], 4153-
61Bpetpseudo_041542229..1543317 [+], 1089pseudogeneTfc16, T4SS component 
62tnp101543350..1543637 [+], 288transposase
63Bpet14951543634..1544524 [+], 891probable transposase
64Bpetpseudo_051544570..1546381 [+], 1812pseudogeneTfc16, T4SS component 
65Bpet14961546395..1547159 [+], 765putative protein-disulfide isomerase
66Bpet14971547343..1547789 [+], 447putative DNA repair protein RadC
67Bpet14981547845..1549104 [+], 1260putative integrase/recombinase
68Bpet14991549101..1550093 [+], 993putative integrase/recombinase
69Bpet15001550090..1551100 [+], 1011putative integrase/recombinase
70Bpet15011551600..1552046 [+], 447conserved hypothetical proteinTfc24, T4SS component 
71Bpet15021551923..1552990 [+], 1068conserved hypothetical proteinTfc23, T4SS component 
72Bpet15031553000..1554397 [+], 1398conserved hypothetical proteinTfc22, T4SS component 
73Bpet15041554394..1554753 [+], 360hypothetical protein predicted by Glimmer/Critica
74Bpet15051554769..1556286 [+], 1518conserved hypothetical proteinTfc19, T4SS component 
75Bpet15061556300..1556677 [-], 378putative transposon
76Bpet15071556705..1557163 [-], 459conserved hypothetical protein
77Bpet15081557163..1557480 [-], 318probable suppressor protein
78Bpet15091557786..1559633 [+], 1848putative helicaseRelaxase, MOBH Family
79Bpet15101559933..1560112 [-], 180putative transposon
80Bpet15111560148..1560621 [-], 474putative transcriptional regulator
81Bpet15121560803..1561570 [-], 768similar to glucose 1-dehydrogenase
82Bpet15131561652..1562170 [-], 519Biphenyl dioxygenase small subunit
83Bpetpseudo_061562213..1562752 [-], 540pseudogene
84Bpet15141562792..1564339 [-], 1548putative transposase
85Bpet15151564448..1565650 [-], 1203probable dihydrolipoamide dehydrogenase
86Bpet15161565629..1566108 [-], 480Putative acyl-CoA thioester hydrolase
87Bpet15171566127..1567602 [-], 1476probable glutathione reductase
88Bpet15181567491..1568060 [-], 570probable glutathione S-transferase
89gst21568129..1568749 [-], 621putative glutathione transferase
90Bpet15201568763..1569353 [-], 591putative enzyme
91Bpet15211569368..1569670 [-], 303hypothetical protein predicted by Glimmer/Critica
92Bpet15221569683..1569988 [-], 306conserved hypothetical protein
93Bpet15231570186..1572237 [-], 2052transposition-related fusion-protein
94Bpet15241572677..1573705 [-], 1029glycosyltransferase
95Bpet15251573702..1574760 [-], 1059glycosyltransferase
96Bpet15261574753..1575355 [-], 603acetyltransferase
97Bpet15271575339..1576721 [-], 1383conserved hypothetical protein
98Bpet15281576782..1577165 [-], 384putative transposase
99Bpet15291577568..1579115 [-], 1548putative transposase
100Bpet15301579174..1579845 [+], 672ISSod11, transposase
101Bpet15311580078..1580320 [+], 243conserved hypothetical protein
102Bpet15321580338..1580688 [+], 351conserved hypothetical protein
103clcR1580832..1581716 [-], 885transcriptional regulator clcR
104clcA1581886..1582668 [+], 783catechol 1,2-dioxygenase
105catB21582665..1583777 [+], 1113muconate cycloisomerase I
106bug361583804..1584787 [+], 984putative secreted protein
107Bpet15371584809..1585519 [+], 711probable carboxymethylenebutenolidase
108Bpet15381585516..1586574 [+], 1059maleylacetate reductase
109Bpet15391586690..1587673 [+], 984transcriptional regulator, AraC family
110Bpet15401588469..1589731 [+], 1263probable Ring hydroxylating alpha subunit
111Bpet15411589734..1590213 [+], 480conserved hypothetical protein
112Bpet15421590311..1591288 [+], 978Vanillate O-demethylase oxidoreductase
113Bpet15431591493..1592878 [+], 1386benzoate transport protein, putative
114Bpet15441592784..1593284 [+], 501hypothetical protein predicted by Glimmer/Critica
115intB131593493..1595466 [-], 1974phage-related integrase
116murB1595859..1596920 [+], 1062UDP-N-acetylmuramate dehydrogenase
117dapB1596967..1597758 [-], 792-
118omlA1597819..1598547 [-], 729outer membrane lipoprotein OmlA
119fur1598708..1599130 [+], 423ferric uptake regulation protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins111Fasta
(1) Lechner M; Schmitt K; Bauer S; Hot D; Hubans C; Levillain E; Locht C; Lemoine Y; Gross R (2009). Genomic island excisions in Bordetella petrii. BMC Microbiol. 0.472916667. [PudMed:19615092] experimental
 
experimental experimental literature