ICEberg
I. Information of ICE
ICEberg ID219
Name ICE-GI1 This ICE is derived from experimental literature
FamilyICEclc
OrganismBordetella petrii DSM 12804
Size (bp)255514
GC content [Genome] (%)61.73[65.48]
Insertion sitetRNA-Gly (tRNA-10)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAM902716 (complete ICE sequence in this genome)
Replicon chromosome (5287950 bp, BioProject:28135) [NC_010170]
Genome coordinates1083989..1339502 
Putative oriT region -
Putative relaxase coordinates: 1155741..1157603; Locus tag: Bpet1092;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICE-GI1 is not available.



The graph information of ICE-GI1 components from AM902716
Complete gene list of ICE-GI1 from AM902716
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1Bpet10031079149..1079589 [+], 441phage related lysozyme
2Bpet10041079794..1080066 [+], 273putative membrane protein
3Bpet10051080336..1081418 [-], 1083conserved hypothetical protein
4Bpet10061081617..1081916 [-], 300centaurin, alpha
5Bpet10071082211..1082876 [-], 666conserved hypothetical protein
6Bpet10081082899..1083390 [-], 492hypothetical protein predicted by Glimmer/Critica
7arsH11084242..1084757 [-], 516putative NADPH-dependent FMN reductase
8Bpet10101085101..1085553 [-], 453hypothetical protein predicted by Glimmer/Critica
9Bpet10111085860..1086342 [+], 483transcriptional regulator, MerR-family
10Bpet10121086354..1086998 [+], 645putative membrane protein
11Bpet10131087389..1088093 [+], 705ParB-like nuclease
12Bpet10141088132..1088557 [+], 426Transposase insF for insertion sequence IS3A/B/C/D/E/fA.
13Bpet10151088524..1088760 [+], 237IstB-like ATP-binding proteinTrbB, T4SS component 
14Bpet10161088812..1088964 [+], 153hypothetical protein
15Bpet10171089183..1090223 [-], 1041putative membrane protein
16Bpet10181090293..1091054 [-], 762integrase, catalytic domain
17Bpet10191091204..1091542 [-], 339transposase IS911 HTH and LZ region
18Bpet10201091695..1092108 [+], 414transcriptional regulator, MerR-family
19Bpet10211092232..1092756 [+], 525putative transposase
20arsC11092800..1093264 [-], 465arsenate reductase
21Bpet10231093237..1094322 [-], 1086putative sodium bile acid symporter family protein
22Bpet10241094333..1094830 [-], 498-
23Bpet10251094843..1095313 [-], 471glyoxalase family protein
24Bpet10261095326..1095673 [-], 348putative transcriptional regulator, ArsR-family
25Bpet10271096271..1097017 [+], 747receptor protein-tyrosine kinase
26alpA11097136..1097348 [+], 213putative transcriptional regulator (phage-related)
27parA11097391..1098266 [+], 876hypothetical protein
28Bpet10301098250..1098519 [+], 270conserved hypothetical protein
29Bpet10311098512..1100191 [+], 1680conserved hypothetical protein
30Bpet10321100206..1100766 [+], 561conserved hypothetical protein
31Bpet10331100770..1102002 [+], 1233hypothetical protein
32Bpet10341102433..1103227 [+], 795putative transposon
33Bpet10351103224..1103751 [+], 528conserved hypothetical protein
34ssb11103826..1104278 [+], 453-
35topB21104554..1106575 [+], 2022DNA topoisomerase III
36Bpet10381107107..1107700 [+], 594putative DNA-cytosine methyltransferase
37Bpet10391107785..1108834 [-], 1050Tyrosine recombinase xerD.Integrase 
38Bpet10401108827..1109822 [-], 996integrase/recombinase
39Bpet10411109822..1111030 [-], 1209integrase/recombinase
40Bpet10421111201..1112211 [+], 1011putative DNA-cytosine methyltransferase
41Bpet10431112455..1113012 [+], 558hypothetical protein
42Bpet10441113067..1113513 [+], 447hypothetical protein
43Bpet10451113947..1114168 [+], 222conserved hypothetical protein
44Bpet10461114190..1114813 [+], 624conserved hypothetical protein
45Bpet10471114762..1115448 [+], 687conserved hypothetical protein
46Bpet10481115532..1116269 [+], 738conserved hypothetical protein
47Bpet10491116366..1116644 [+], 279conserved hypothetical protein
48Bpet10501116927..1117739 [+], 813conserved hypothetical protein
49Bpet10511117860..1118213 [+], 354conserved hypothetical protein
50Bpet10521118576..1119493 [+], 918hypothetical protein
51Bpet10531119638..1120465 [+], 828conserved hypothetical protein
52Bpet10541120560..1121249 [+], 690conserved hypothetical protein
53Bpet10551121344..1121682 [+], 339hypothetical protein
54Bpet10561121789..1122088 [+], 300hypothetical protein
55Bpet10571122690..1124408 [+], 1719reverse transcriptase
56Bpet10581124627..1124887 [+], 261conserved hypothetical protein
57Bpet10591124964..1125611 [+], 648conserved hypothetical protein
58Bpet10601126339..1128054 [+], 1716reverse transcriptase
59Bpet10611128185..1129132 [+], 948hypothetical protein, (pXO1-10)
60Bpet10621129184..1129504 [+], 321hypothetical protein predicted by Glimmer/Critica
61Bpet10631129594..1129899 [+], 306conserved hypothetical protein
62Bpet10641130008..1132320 [+], 2313conserved plasmid related protein
63Bpet10651132434..1133303 [+], 870conserved hypothetical protein
64Bpet10661133464..1134063 [+], 600putative secreted proteinTfc2, T4SS component 
65Bpet10671134060..1134704 [+], 645putative membrane proteinTfc2, T4SS component 
66Bpet10681134719..1135444 [+], 726conserved protein, putatively exportedTfc3, T4SS component 
67Bpet10691135426..1136031 [+], 606conserved exported proteinTfc4, T4SS component 
68Bpet10701136028..1136576 [+], 549putative exported proteinTfc5, T4SS component 
69Bpet10711136581..1138770 [+], 2190putative membrane proteinTfc6, T4SS component 
70Bpet10721138767..1139516 [+], 750putative membrane proteinTfc8, T4SS component 
71Bpet10731139615..1139998 [+], 384putative membrane proteinTfc9, T4SS component 
72Bpet10741139995..1140228 [+], 234conserved hypothetical protein
73Bpet10751140245..1140604 [+], 360conserved hypothetical proteinTfc10, T4SS component 
74Bpet10761140617..1141027 [+], 411conserved hypothetical proteinTfc11, T4SS component 
75Bpet10771141024..1141716 [+], 693conserved hypothetical proteinTfc12, T4SS component 
76Bpet10781141713..1142630 [+], 918hypothetical proteinTfc13, T4SS component 
77Bpet10791142620..1144038 [+], 1419putative exported proteinTfc14, T4SS component 
78Bpet10801144019..1144468 [+], 450putative lipoproteinTfc15, T4SS component 
79Bpet10811144468..1147356 [+], 2889conserved hypothetical proteinTfc16, T4SS component 
80Bpet10821147370..1148134 [+], 765conserved hypothetical protein
81radC11148309..1148803 [+], 495DNA repair protein radC homolog
82Bpet10841148967..1149413 [+], 447putative secreted proteinTfc24, T4SS component 
83Bpet10851149440..1150357 [+], 918conserved hypothetical proteinTfc23, T4SS component 
84Bpet10861150367..1151761 [+], 1395conserved hypothetical proteinTfc22, T4SS component 
85Bpet10871151758..1152117 [+], 360hypothetical protein predicted by Glimmer/Critica
86Bpet10881152131..1153678 [+], 1548conserved hypothetical proteinTfc19, T4SS component 
87Bpet10891153706..1154071 [-], 366conserved hypothetical protein
88Bpet10901154153..1154785 [-], 633conserved hypothetical protein
89Bpet10911154798..1155424 [-], 627conserved hypothetical protein
90Bpet10921155741..1157603 [+], 1863putative helicaseRelaxase, MOBH Family
91Bpet10931157673..1158167 [-], 495conserved hypothetical protein
92Bpet10941158359..1158745 [+], 387transposase
93Bpet10951158658..1159137 [-], 480TRm3 transposase
94Bpet10961159708..1160742 [+], 1035-
95bug251161062..1162048 [+], 987putative secreted protein
96Bpet10981162441..1162944 [-], 504hypothetical protein predicted by Glimmer/Critica
97Bpet10991163841..1164485 [+], 645taurine dioxygenase
98Bpet11001164444..1165685 [-], 1242transposase
99Bpet11011165732..1166025 [+], 294Alpha-ketoglutarate-dependent taurine dioxygenase
100Bpet11021166040..1166615 [+], 576conserved hypothetical protein
101Bpet11031166797..1167336 [+], 540hypothetical protein predicted by Glimmer/Critica
102Bpet11041167447..1167731 [+], 285Hydantoin utilization protein A (ORF2).
103Bpet11051167789..1168280 [+], 492putative transposase
104Bpet11061168277..1169341 [+], 1065putative transposase
105Bpet11071169431..1169880 [-], 450-
106Bpet11081170057..1170818 [-], 762integrase, catalytic domain
107Bpet11091170968..1171306 [-], 339transposase IS911 HTH and LZ region
108Bpet11101171311..1172009 [-], 699putative membrane protein
109Bpet11111172096..1173337 [-], 1242transposase
110hyuA1173353..1174993 [-], 1641N-methylhydantoinase A
111Bpet11131175142..1176206 [-], 1065putative transposase
112Bpet11141176203..1176694 [-], 492putative transposase
113Bpet11151176920..1177411 [-], 492conserved hypothetical protein
114acd61177823..1178806 [+], 984acyl-CoA dehydrogenase
115Bpet11171178858..1179925 [+], 1068metallo-beta-lactamase family protein
116Bpet11181179936..1181156 [-], 1221putative phenylacetate-CoA ligase
117Bpet11191181184..1181972 [-], 789enoyl-CoA hydratase
118Bpet11201182158..1183255 [+], 1098-
119Bpet11211183379..1184617 [+], 1239putative thiolase
120Bpet11221184682..1186235 [+], 1554putative ligase
121Bpet11231186326..1187087 [+], 7623-hydroxyacyl-CoA dehydrogenase
122Bpet11241187222..1188022 [+], 801putative high-affinity branched-chain amino acid transport ATP-binding protein
123lcf'1188022..1189323 [+], 1302pseudogene
124Bpet11251189330..1190220 [-], 891probable transposase
125tnp41190217..1190504 [-], 288transposase
126'lcf1190522..1191271 [+], 750pseudogene
127Bpet11271191268..1192152 [+], 885branched-chain amino acid transport system permease protein livH
128Bpet11281192156..1193208 [+], 1053high-affinity branched-chain amino acid transport system permease protein
129Bpet11291193283..1194545 [+], 1263ABC-type branched-chain amino acid transport systems, periplasmic component
130Bpet11301194621..1195391 [+], 771putative branched-chain amino acid ABC transporter, ATP-binding protein
131Bpet11311195403..1196215 [+], 813putative enoyl-CoA hydratase/isomerase
132kduD21196270..1197034 [+], 7652-deoxy-D-gluconate 3-dehydrogenase
133Bpet11331197057..1198001 [-], 945conserved hypothetical protein
134Bpet11341198360..1199070 [+], 711transcriptional regulator, TetR-family
135Bpet11351199122..1199799 [+], 678hypothetical protein predicted by Glimmer/Critica
136Bpet11361199824..1200201 [+], 378hypothetical protein predicted by Glimmer/Critica
137Bpet11371200542..1200850 [+], 309conserved hypothetical protein
138Bpet11381201213..1202025 [+], 813protein with peptidoglycan binding-like domain
139Bpet11391202027..1203091 [-], 1065putative transposase
140Bpet11401203088..1203579 [-], 492conserved hypothetical protein
141Bpet11411203658..1203930 [+], 273conserved hypothetical protein
142Bpet11421203985..1204383 [+], 399ISSfl3 orfA
143Bpet11431204380..1204724 [+], 345hypothetical protein
144Bpet11441204804..1204998 [+], 195conserved hypothetical protein
145Bpet11451205005..1205781 [-], 777hypothetical protein
146istB1206043..1206894 [-], 852Insertion sequence IS5376 putative ATP-binding protein.TrbB, T4SS component 
147Bpet11471206891..1208297 [-], 1407putative transposase
148Bpet11481208263..1208748 [-], 486hypothetical protein predicted by Glimmer/Critica
149Bpet11491208771..1209127 [-], 357ISPpu15, transposase Orf1
150Bpet11501209127..1209450 [-], 324conserved hypothetical protein
151Bpet11511209823..1211199 [+], 1377conserved hypothetical protein
152Bpet11521211211..1211528 [+], 318conserved hypothetical protein
153pccB1211561..1213165 [+], 1605putative propionyl-CoA carboxylase beta subunit
154pccA1213169..1215184 [+], 2016putative biotin carboxylase subunit of propionyl-CoA carboxylase
155Bpet11551215132..1216418 [+], 1287-
156Bpet11561216458..1216946 [+], 489conserved hypothetical protein
157bug261217014..1217979 [+], 966putative secreted protein
158Bpet11581218053..1218841 [+], 789putative enoyl-CoA hydratase/isomerase
159Bpet11591218844..1219644 [+], 801putative enoyl-CoA hydratase
160Bpet11601219641..1220426 [-], 786transcriptional regulator, IclR family
161Bpet11611220429..1221235 [-], 807transcriptional regulator, IclR family
162Bpet11621221315..1222439 [-], 1125NADH-dependent flavin oxidoreductase
163Bpet11631222479..1222769 [-], 291conserved hypothetical protein
164Bpet11641222785..1223546 [-], 762probable short-chain dehydrogenase
165Bpet11651223593..1224315 [-], 723putative branched-chain amino acid ABC transporter, ATP-binding protein
166Bpet11661224305..1225039 [-], 735high-affinity branched-chain amino acid transport, ATP-binding protein
167Bpet11671225047..1225991 [-], 945branched-chain amino acid ABC transporter, permease protein
168Bpet11681225984..1226847 [-], 864putative branched-chain amino acid transport permease
169Bpet11691226897..1228105 [-], 1209putative amino acid ABC transport system, substrate-binding protein
170Bpet11701228179..1229069 [-], 891putative beta-hydroxyacid dehydrogenase
171Bpet11711229084..1229899 [-], 816enoyl-CoA hydratase
172Bpet11721230075..1230983 [+], 909transcriptional regulator, LysR-family
173scoA1231098..1231802 [+], 7053-oxoacid CoA-transferase subunit A
174scoB1231815..1232453 [+], 6393-oxoacid CoA-transferase subunit B
175Bpet11751232725..1233381 [-], 657Cation transport protein
176Bpet11761233414..1234385 [-], 972probable monooxygenase
177Bpet11771234433..1235524 [-], 1092putative NADH:flavin oxidoreductase
178Bpet11781235538..1236542 [-], 1005putative monooxygenase
179Bpet11791236665..1237636 [-], 972transcriptional regulator, LysR-family
180Bpet11801237757..1238734 [+], 978putative monooxygenase
181Bpet11811238746..1239669 [+], 924hypothetical protein predicted by Glimmer/Critica
182Bpet11821239729..1240943 [-], 1215putative monooxygenase
183Bpet11831240927..1241412 [-], 486-
184Bpet11841241603..1242805 [+], 1203putative Substrate-binding periplasmic protein
185Bpet11851242854..1243729 [+], 876putative branched-chain amino acid transport permease
186Bpet11861243742..1244731 [+], 990putative branched-chain amino acid transport permease
187Bpet11871244721..1245473 [+], 753putative branched-chain amino acid ABC transporter, ATP-binding protein
188Bpet11881245482..1246186 [+], 705putative branched-chain amino acid ABC transporter, ATP-binding protein
189Bpet11891246238..1246936 [+], 699transcriptional regulator, TetR family
190Bpet11901246941..1247897 [-], 957transcriptional regulator, LysR-family
191bug271247991..1248968 [+], 978putative secreted protein
192Bpet11921248985..1250706 [+], 1722conserved hypothetical protein
193Bpet11931250758..1251222 [-], 465transcriptional regulator, AsnC-family
194Bpet11941251413..1252327 [+], 915putative dehydrogenase
195Bpet11951252341..1253294 [+], 954putative membrane protein
196Bpet11961253297..1254127 [+], 831transcriptional regulator, LysR-family
197Bpet11971254072..1254761 [+], 690Transposase IS3/IS911
198Bpet11981254794..1255348 [+], 555transposase
199Bpet11991255334..1256398 [-], 1065putative transposase
200Bpet12001256395..1256886 [-], 492conserved hypothetical protein
201Bpet12011257038..1257940 [-], 903transcriptional regulator, LysR-family
202Bpet12021258034..1259533 [-], 1500outer membrane efflux protein
203Bpet12031259493..1260398 [-], 906HlyD family secretion protein
204Bpet12041260635..1261126 [+], 492putative transposase
205Bpet12051261123..1262052 [+], 930putative transposase
206Bpet12061262088..1262579 [+], 492putative transposase
207Bpet12071262576..1263640 [+], 1065putative transposase
208Bpet12081263834..1264130 [+], 297hypothetical protein predicted by Glimmer/Critica
209bug281264178..1265152 [+], 975putative secreted protein
210Bpet12101265291..1267405 [+], 2115Acetyl-CoA synthetase
211acd71267550..1268704 [+], 1155acyl-CoA dehydrogenase
212Bpet12121269012..1269788 [+], 777hypothetical protein, probable enoyl-CoA hydratase/isomerase family member
213Bpet12131269788..1270567 [+], 780oxidoreductase, short-chain dehydrogenase/reductase
214acd81270606..1271748 [+], 1143acyl-CoA dehydrogenase
215Bpet12151271745..1273913 [+], 2169putative acetyl-CoA synthetase
216Bpet12161273910..1274902 [+], 993Similar to dioxygenases related to 2-nitropropane
217Bpet12171275075..1275575 [+], 501putative secreted protein
218Bpet12181275568..1276887 [+], 1320putative membrane protein (TrapT family, dctM subunit transport precursor)
219Bpet12191276937..1278043 [+], 1107hypothetical protein predicted by Glimmer/Critica
220Bpet12201278140..1279336 [+], 1197redicted acyl-CoA transferases/carnitine dehydratase
221Bpet12211279380..1280519 [+], 1140-
222Bpet12221280560..1281315 [-], 756enoyl-CoA hydratase
223Bpet12231281435..1282613 [-], 1179-
224Bpet12241282677..1283537 [-], 861putative acyl dehydratase
225bug291283551..1284531 [-], 981putative secreted protein
226bug301284594..1285574 [-], 981putative secreted protein
227Bpet12271285651..1286952 [-], 1302Probable acyl-CoA transferase/carnitine dehydratase
228Bpet12281287007..1287477 [-], 471acyl dehydratase, MaoC family
229Bpet12291287543..1288733 [-], 1191putative thiolase
230Bpet12301288730..1289143 [-], 414conserved hypothetical protein
231Bpet12311289140..1289955 [-], 816hypothetical protein, probable enoyl-CoA hydratase/isomerase family member
232Bpet12321290384..1291085 [-], 702conserved hypothetical protein
233bug311291257..1292246 [-], 990putative secreted protein
234Bpet12341292586..1294274 [+], 1689transcriptional regulator
235Bpet12351294509..1294973 [+], 465Thioesterase superfamily member 2
236Bpet12361294988..1296208 [-], 1221ABC transporter, substrate binding protein
237Bpet12371296532..1298241 [-], 1710transcriptional regulator
238Bpet12381298385..1299632 [+], 1248CoA-transferase family III (CaiB/BaiF) protein
239Bpet12391299673..1301379 [+], 1707putative ligase/synthetase
240Bpet12401301376..1302146 [+], 771enoyl-CoA dehydratase
241Bpet12411302150..1302896 [+], 747putative short chain dehydrogenase
242acd91302940..1304115 [+], 1176acyl-CoA dehydrogenase
243hbd1304112..1304987 [+], 8763-hydroxybutyryl-CoA dehydrogenase
244Bpet12441304993..1305646 [+], 654hypothetical protein
245Bpet12451305643..1306776 [+], 1134-
246Bpet12461306773..1307762 [+], 990NADPH quinone oxidoreductase, putative
247Bpet12471307824..1308633 [-], 810putative enoyl-CoA hydratase
248Bpet12481309348..1309584 [-], 237TRm3 transposase
249Bpet12491309563..1309877 [-], 315putative membrane protein
250bug321310194..1311153 [-], 960putative secreted protein
251Bpet12511311222..1311821 [-], 600hypothetical protein predicted by Glimmer/Critica
252Bpet12521311977..1312909 [-], 933transcriptional regulatory, LysR-family
253ggt21313064..1314899 [+], 1836-
254Bpet12541314925..1316751 [-], 1827conserved hypothetical protein
255bug331317030..1317998 [+], 969putative secreted protein
256Bpet12561317995..1318933 [-], 939transcriptional regulator, LysR-family
257bug341319091..1320056 [-], 966putative secreted protein
258Bpet12581320264..1321844 [-], 1581Ketoglutarate semialdehyde dehydrogenase
259Bpet12591321841..1323367 [-], 1527sodium/alanine symporter family protein
260dadA1323479..1324720 [-], 1242D-amino acid dehydrogenase, small subunit
261mdh31324758..1325792 [-], 1035Malate dehydrogenase
262Bpet12621325810..1326808 [-], 999-
263Bpet12631326858..1328114 [-], 1257putative prolidase
264Bpet12641328126..1328665 [-], 540-
265Bpet12651328691..1330073 [-], 1383putative transport protein
266Bpet12661330119..1330844 [-], 726putative amino acid ABC transporter ATP binding protein
267Bpet12671330837..1331499 [-], 663ABC-type amino acid transport system, permease component
268Bpet12681331503..1332168 [-], 666polar amino acid transport system permease protein
269Bpet12691332232..1333071 [-], 840ABC transporter, substrate binding protein
270dapA11333155..1334057 [-], 903dihydrodipicolinate synthase
271Bpet12711334374..1335066 [+], 693probable transcriptional regulator
272Bpet12721335320..1336210 [+], 891transcriptional regulator, LysR-family
273Bpet12731336235..1336528 [-], 294predicted transcriptional regulator
274Bpet12741336636..1337280 [+], 645transcriptional regulator; LysR family
275intB131337333..1339258 [-], 1926phage-related integrase
276Bpet12761339793..1340359 [+], 567conserved hypothetical protein
277Bpet12771340356..1341150 [+], 795conserved hypothetical protein
278Bpet12781341169..1341819 [-], 651Probable glutathione S-transferase
279Bpet12791341904..1342812 [+], 909transcriptional regulator, LysR-family
280gst11342825..1343538 [-], 714putative glutathione transferase
281Bpet12811343656..1344405 [-], 750transcriptional regulator, IclR family
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins268Fasta
(1) Lechner M; Schmitt K; Bauer S; Hot D; Hubans C; Levillain E; Locht C; Lemoine Y; Gross R (2009). Genomic island excisions in Bordetella petrii. BMC Microbiol. 0.472916667. [PudMed:19615092] experimental
 
experimental experimental literature