ICEberg
I. Information of ICE
ICEberg ID213
Name AICESav3728 {AICE} This is a predicted ICE derived from literature
FamilyUnclassified
OrganismStreptomyces avermitilis MA-4680
Size (bp)21344
GC content [Genome] (%)64.35[70.72]
Insertion sitetRNA-Arg (SAV_t18)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceBA000030 (complete ICE sequence in this genome)
Replicon chromosome (9025608 bp, BioProject:189) [NC_003155]
Genome coordinates4614801..4636144 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of AICESav3728 {AICE} is not available.



The graph information of AICESav3728 {AICE} components from BA000030
Complete gene list of AICESav3728 {AICE} from BA000030
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SAV_37264610608..4612356 [-], 1749hypothetical protein
2SAV_37274612749..4613219 [-], 471hypothetical protein
3int84614801..4615940 [-], 1140putative tyrosine-family recombinase/integraseIntegrase 
4repSA14616145..4617458 [-], 1314putative replication initiation proteinReplication protein 
5spdD14617607..4617852 [-], 246putative SpdD protein
6SAV_37314617877..4618071 [-], 195hypothetical protein
7spdB14618088..4618279 [-], 192putative mobile element transfer protein SpdB
8spdA14618292..4618918 [-], 627putative mobile element transfer protein SpdA
9traSA14619007..4620386 [-], 1380putative plasmid transfer proteinTranslocation protein 
10pra14620386..4620742 [-], 357putative replication activator protein Pra
11korSA14620920..4621708 [-], 789putative regulatory protein KorSA, GntR-family transcriptional regulator
12SAV_37374621735..4622223 [+], 489putative MutT-like protein
13SAV_37384622270..4622698 [+], 429putative regulatory protein
14SAV_37394622692..4623039 [+], 348hypothetical protein
15SAV_37404623036..4623425 [+], 390hypothetical protein
16SAV_37414623466..4625235 [-], 1770putative IS481 family ISMav2-like transposaseIntegrase 
17SAV_37424626525..4627730 [-], 1206hypothetical protein
18SAV_37434630443..4631972 [-], 1530hypothetical protein
19SAV_37444632395..4632796 [+], 402hypothetical protein
20SAV_37454633048..4633491 [+], 444hypothetical protein
21SAV_37464634597..4636144 [+], 1548hypothetical protein
22SAV_37474637051..4637479 [+], 429hypothetical protein
23SAV_37484638366..4639334 [-], 969hypothetical protein
24SAV_37494639693..4640202 [-], 510hypothetical protein
25SAV_37504640621..4640953 [+], 333hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins19Fasta
(1) Ghinet MG; Bordeleau E; Beaudin J; Brzezinski R; Roy S; Burrus V (2011). Uncovering the prevalence and diversity of integrating conjugative elements in actinobacteria. PLoS One. 6(11):e27846. [PudMed:22114709] in_silico
(2) te Poele EM; Bolhuis H; Dijkhuizen L (2008). Actinomycete integrative and conjugative elements. Antonie Van Leeuwenhoek. 94(1):127-43. [PudMed:18523858]
 
in_silico in silico analysis literature