ICEberg
I. Information of ICE
ICEberg ID206
Name AICEFraal5456 {AICE} This is a predicted ICE derived from literature
FamilyUnclassified
OrganismFrankia alni ACN14a
Size (bp)13245
GC content [Genome] (%)69.08[72.83]
Insertion sitetRNA-Met (FRAALtRNA33)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCT573213 (complete ICE sequence in this genome)
Replicon chromosome (7497934 bp, BioProject:17403) [NC_008278]
Genome coordinates5891518..5904762 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of AICEFraal5456 {AICE} is not available.



The graph information of AICEFraal5456 {AICE} components from CT573213
Complete gene list of AICEFraal5456 {AICE} from CT573213
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1FRAAL54355887289..5887882 [-], 594Putative RNA polymerase ECF-subfamily sigma factor
2FRAAL54375888798..5890135 [+], 1338Hypothetical protein
3FRAAL54385891344..5891445 [+], 102hypothetical protein
4FRAAL54395891518..5891631 [+], 114hypothetical protein
5FRAAL54405891557..5892339 [-], 783Regulatory protein cII (partial)
6FRAAL54415892286..5892348 [+], 63hypothetical protein
7FRAAL54425892852..5894018 [-], 1167Conserved hypothetical protein
8FRAAL54435894005..5894991 [-], 987Hypothetical protein; putative plasmid protein
9FRAAL54445895403..5895633 [+], 231hypothetical protein
10FRAAL54455895630..5896466 [+], 837Conserved hypothetical protein
11FRAAL54465896523..5896975 [+], 453Hypothetical protein; putative Modular polyketide synthase
12FRAAL54475897205..5897624 [-], 420Putative Transcriptional regulator
13FRAAL54485897841..5898245 [+], 405hypothetical protein
14FRAAL54495898323..5898541 [+], 219hypothetical protein; putative signal peptide
15traSA5898664..5900232 [+], 1569Plasmid transfer proteinTranslocation protein 
16repSA5900281..5901957 [+], 1677Replication initiator proteinReplication protein 
17xis5901992..5902183 [+], 192Excisionase (partial)
18FRAAL54535902190..5902393 [-], 204conserved hypothetical protein
19FRAAL54545902544..5902843 [+], 300hypothetical protein
20FRAAL54555903080..5903283 [+], 204hypothetical protein
21int5903232..5904560 [+], 1329Integrase (Recombinase)Integrase 
22FRAAL54575905007..5905198 [+], 192hypothetical protein
23FRAAL54585905171..5905950 [-], 780conserved hypothetical protein
24FRAAL54595906070..5906177 [+], 108hypothetical protein
25FRAAL54605906639..5907145 [+], 507Putative TetR-family transcriptional regulator
26FRAAL54615907230..5908270 [-], 1041putative Epoxide hydratase
27FRAAL54625908290..5908868 [+], 579putative TetR-family transcriptional regulator
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins18Fasta
(1) te Poele EM; Bolhuis H; Dijkhuizen L (2008). Actinomycete integrative and conjugative elements. Antonie Van Leeuwenhoek. 94(1):127-43. [PudMed:18523858]