ICEberg
I. Information of ICE
ICEberg ID205
Name ICE(Tn4371)6070 This is a predicted ICE derived from literature
FamilyTn4371
OrganismPseudomonas aeruginosa PACS171b
Size (bp)42156
GC content [Genome] (%)63.98
Insertion siteTTTTTTAT
FunctionGlyoxalase/bleomycin resistance; arsenical resistance
Species that ICE can be transferred to-
Nucleotide SequenceEU595746 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1853..44008 
Putative oriT region -
Putative relaxase coordinates: 18881..20869; Locus tag: PACL_0252;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of ICE(Tn4371)6070 is not available.



The graph information of ICE(Tn4371)6070 components from EU595746
Complete gene list of ICE(Tn4371)6070 from EU595746
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1PACL_02342150..2395 [-], 246hypothetical protein
2PACL_02352392..3669 [-], 1278type IV secretory pathway proteinTrbI, T4SS component 
3cagX3672..4676 [-], 1005type IV secretory pathway proteinTrbG, T4SS component 
4trbF4673..5377 [-], 705type IV secretory pathway proteinTrbF, T4SS component 
5trbL5395..6783 [-], 1389type IV secretory pathway proteinTrbL, T4SS component 
6PACL_02396780..7094 [-], 315hypothetical proteinTrbJ, T4SS component 
7PACL_02407107..7850 [-], 744conjugal transfer/entry exclusion proteinTrbJ, T4SS component 
8cagE7847..10297 [-], 2451type IV secretory pathway proteinTrbE, T4SS component 
9trbD10310..10579 [-], 270type IV secretory pathway proteinTrbD, T4SS component 
10trbC10576..10968 [-], 393type IV secretory pathway proteinTrbC, T4SS component 
11PACL_024410965..12035 [-], 1071type II/IV secretion system proteinTrbB, T4SS component 
12PACL_024512032..12520 [-], 489hypothetical protein
13traG12517..14523 [-], 2007type IV secretory pathway proteinVirD4, T4SS component 
14PACL_024714759..15031 [-], 273hypothetical protein
15PACL_024815059..15970 [-], 912transcription regulator
16PACL_024916116..16208 [-], 93hypothetical protein
17PACL_025016212..17075 [-], 864universal stress protein family protein
18PACL_025117090..18568 [-], 1479sulfate permease
19PACL_025218881..20869 [-], 1989type IV secretory pathway proteinRelaxase, MOBL Family
20traF21318..21917 [-], 600type IV secretory pathway proteinTraF, T4SS component 
21PACL_025421914..22753 [-], 840conserved hypothetical protein
22PACL_025522728..23366 [-], 639chromosome partitioning protein
23PACL_025623632..24477 [-], 846plasmid replication initiator protein
24PACL_025724504..24845 [-], 342conserved hypothetical protein
25PACL_025824903..25673 [-], 771conserved hypothetical protein
26PACL_025926017..26568 [-], 552hypothetical protein
27PACL_026026687..26980 [+], 294transcription regulator protein
28PACL_026127299..27652 [-], 354conserved hypothetical proteinTraF, T4SS component 
29PACL_026228698..28973 [-], 276heavy metal transport protein
30PACL_026328986..29333 [-], 348mercury ion transport protein
31PACL_026429409..29807 [+], 399MerR family regulatory protein
32PACL_026529938..30147 [-], 210conserved hypothetical protein
33PACL_026630210..32255 [-], 2046hypothetical protein
34PACL_026732336..33163 [-], 828conserved hypothetical protein
35PACL_026833867..34145 [-], 279hypothetical protein
36PACL_026934211..34561 [-], 351hypothetical protein
37PACL_027034931..35260 [+], 330bacterial regulatory protein
38PACL_027135273..35719 [+], 447glyoxalase/bleomycin resistance protein
39PACL_027235731..36228 [+], 498protein-tyrosine-phosphatase
40PACL_027336270..36629 [+], 360arsenical resistance operon repressor protein
41PACL_027436643..38409 [+], 1767arsenical resistance efflux pump protein
42PACL_027538439..39518 [+], 1080arsenical resistance-3 family protein
43PACL_027639533..39955 [+], 423arsenate reductase
44PACL_027739933..40670 [+], 738NADPH-dependent FMN reductase
45PACL_027840712..41221 [-], 510RadC family DNA repair protein
46PACL_027941562..42578 [-], 1017conserved hypothetical protein
47PACL_028042623..43825 [-], 1203phage integraseIntegrase 
48PACL_028144332..45015 [+], 684transcriptional regulator Dnr
49PACL_028245039..45191 [-], 153hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins47Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature