ICEberg
I. Information of ICE
ICEberg ID204
Name ICE(Tn4371)6068 This is a predicted ICE derived from literature
FamilyTn4371
OrganismStenotrophomonas maltophilia K279a
Size (bp)43509
GC content [Genome] (%)62.66[66.32]
Insertion siteTTTTTTGT
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAM743169 (complete ICE sequence in this genome)
Replicon chromosome (4851126 bp, BioProject:30351) [NC_010943]
Genome coordinates1324222..1367730 
Putative oriT region -
Putative relaxase coordinates: 1345632..1347596; Locus tag: Smlt1308;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of ICE(Tn4371)6068 is not available.



The graph information of ICE(Tn4371)6068 components from AM743169
Complete gene list of ICE(Tn4371)6068 from AM743169
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1rplU1322082..1322390 [+], 309putative 50S ribosomal protein L21
2rpmA1322409..1322672 [+], 264putative 50S ribosomal protein L27
3Smlt12801322866..1323918 [+], 1053putative conserved GTP-binding protein
4Smlt12821324492..1324737 [-], 246conserved hypothetical protein
5trbI1324734..1325993 [-], 1260putative conjugal transfer proteinTrbI, T4SS component 
6trbG1325996..1326982 [-], 987putative conjugal transfer proteinTrbG, T4SS component 
7trbF1326979..1327683 [-], 705putative conjugal transfer proteinTrbF, T4SS component 
8trbL1327702..1329000 [-], 1299putative conjugal transfer proteinTrbL, T4SS component 
9trbJ1329012..1329749 [-], 738putative conjugal transfer proteinTrbJ, T4SS component 
10trbE1329746..1332232 [-], 2487putative conjugal transfer proteinTrbE, T4SS component 
11trbD1332243..1332515 [-], 273putative conjugal transfer proteinTrbD, T4SS component 
12trbC1332512..1332895 [-], 384putative conjugal transfer proteinTrbC, T4SS component 
13trbB1332892..1333932 [-], 1041putative conjugal transfer proteinTrbB, T4SS component 
14Smlt12921333929..1334375 [-], 447conserved hypothetical protein
15traG1334372..1336372 [-], 2001putative conjugal transfer proteinVirD4, T4SS component 
16Smlt12941336606..1336866 [-], 261conserved hypothetical protein
17Smlt12951336911..1337804 [-], 894putative LysR family transcriptional regulator
18Smlt12961337815..1337940 [-], 126putative regulator, pseudogene
19Smlt12971337956..1338126 [-], 171putative esterase, pseudogene
20Smlt12981338123..1338425 [-], 303conserved hypothetical protein
21Smlt12991338412..1339266 [-], 855putative NAD(P)H dehydrogenase [quinone]
22Smlt13001339362..1340264 [+], 903putative LysR family transcriptional regulator
23Smlt13011340359..1340619 [-], 261conserved hypothetical protein
24Smlt13021340656..1341549 [-], 894putative LysR family transcriptional regulator
25Smlt13031341582..1342424 [-], 843conserved hypothetical protein
26Smlt13041342421..1342804 [-], 384putative 4-carboxymuconolactone decarboxylase
27Smlt13051342737..1343207 [-], 471putative MerR family transcriptional regulator
28Smlt13061343295..1344665 [-], 1371putative MFS family transmembrane transporter
29Smlt13071344784..1345635 [+], 852putative LysR family transcriptional regulator
30Smlt13081345632..1347596 [-], 1965conserved hypothetical proteinRelaxase, MOBL Family
31Smlt13091347593..1348030 [-], 438conserved hypothetical protein
32Smlt13101348056..1348631 [-], 576putative transmembrane anchor conjugal transfer proteinTraF, T4SS component 
33Smlt13111348628..1349152 [-], 525conserved hypothetical protein
34Smlt13121349149..1349412 [-], 264putative parB partition protein
35Smlt13131349409..1350047 [-], 639putative ParA/CobQ/CobB/MinD nucleotide binding domain protein
36Smlt13141350298..1351131 [-], 834putative RepA-like replication protein
37Smlt13151351158..1351448 [-], 291conserved hypothetical protein
38Smlt13161351532..1352335 [-], 804conserved hypothetical protein
39Smlt13181352687..1353037 [-], 351conserved hypothetical protein
40Smlt13191353340..1353636 [+], 297putative HTH transcriptional regulator
41Smlt13201353993..1354307 [-], 315conserved hypothetical proteinTraF, T4SS component 
42Smlt1320A1354642..1355064 [-], 423conserved hypothetical protein
43Smlt13221355155..1355490 [+], 336hypothetical protein
44Smlt13231355532..1356575 [+], 1044putative transposase
45Smlt13241356572..1357087 [+], 516conserved hypothetical protein
46Smlt13251357200..1357388 [-], 189conserved hypothetical protein
47Smlt13261357451..1359481 [-], 2031putative ParB-like nuclease domain protein
48Smlt13271359562..1360392 [-], 831conserved hypothetical protein
49Smlt13281360425..1360622 [-], 198conserved hypothetical protein
50Smlt13291361053..1362183 [+], 1131conserved hypothetical protein
51Smlt13311362149..1363831 [+], 1683putative transmembrane protein
52Smlt13321363664..1364188 [-], 525putative RadC DNA repair protein, pseudogene
53Smlt13331364225..1365508 [-], 1284conserved hypothetical protein
54Smlt13341365534..1365839 [-], 306conserved hypothetical protein
55Smlt13351365820..1366203 [-], 384conserved hypothetical protein
56Smlt13361366343..1367584 [-], 1242putative prophage integraseIntegrase 
57rpsT1367795..1368064 [-], 270putative 30S ribosomal protein S20
58mviN1368167..1369786 [+], 1620putative transmembrane virulence factor MmviN
59ribF1369862..1370809 [+], 948putative riboflavin biosynthesis protein RibF
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins50Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature