ICEberg
I. Information of ICE
ICEberg ID202
Name ICE(Tn4371)6066 This is a predicted ICE derived from literature
FamilyTn4371
OrganismAcidovorax ebreus TPSY
Size (bp)49020
GC content [Genome] (%)65.23[66.83]
Insertion siteTTTTTCAT
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP001392 (complete ICE sequence in this genome)
Replicon chromosome (3796573 bp, BioProject:29975) [NC_011992]
Genome coordinates3746937..3795957 
Putative oriT region -
Putative relaxase coordinates: 3773366..3775333; Locus tag: Dtpsy_3520;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of ICE(Tn4371)6066 is not available.



The graph information of ICE(Tn4371)6066 components from CP001392
Complete gene list of ICE(Tn4371)6066 from CP001392
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1Dtpsy_34923743332..3743886 [+], 555adenine phosphoribosyltransferase
2Dtpsy_34933743922..3744758 [-], 837conserved hypothetical protein
3Dtpsy_34943744896..3745417 [-], 522cyclic nucleotide-binding protein
4Dtpsy_34953745475..3746878 [-], 1404tRNA modification GTPase TrmE
5Dtpsy_34963747218..3747463 [-], 246conserved hypothetical protein
6Dtpsy_34973747460..3748731 [-], 1272conjugation TrbI family proteinTrbI, T4SS component 
7Dtpsy_34983748734..3749726 [-], 993P-type conjugative transfer protein TrbGTrbG, T4SS component 
8Dtpsy_34993749723..3750427 [-], 705Conjugal transfer proteinTrbF, T4SS component 
9Dtpsy_35003750446..3751798 [-], 1353P-type conjugative transfer protein TrbLTrbL, T4SS component 
10Dtpsy_35013751795..3752103 [-], 309putative lipoproteinTrbJ, T4SS component 
11Dtpsy_35023752115..3752870 [-], 756P-type conjugative transfer protein TrbJTrbJ, T4SS component 
12Dtpsy_35033752867..3755338 [-], 2472CagE TrbE VirB component of type IV transporter systemTrbE, T4SS component 
13Dtpsy_35043755353..3755625 [-], 273putative conjugal transfer TrbD transmembrane proteinTrbD, T4SS component 
14Dtpsy_35053755622..3756008 [-], 387Conjugal transfer protein TrbCTrbC, T4SS component 
15Dtpsy_35063756005..3757039 [-], 1035P-type conjugative transfer ATPase TrbBTrbB, T4SS component 
16Dtpsy_35073757036..3757500 [-], 465CopG domain protein DNA-binding domain protein
17Dtpsy_35083757497..3759500 [-], 2004TRAG family proteinVirD4, T4SS component 
18Dtpsy_35093759716..3759943 [-], 228conserved hypothetical protein
19Dtpsy_35103759969..3760883 [-], 915transcriptional regulator, LysR family
20Dtpsy_35113761127..3761756 [-], 630two component transcriptional regulator, LuxR family
21Dtpsy_35123761753..3762826 [-], 1074histidine kinase
22Dtpsy_35133762831..3763076 [-], 246protein of unknown function DUF156
23Dtpsy_35143763140..3763868 [-], 729MgtC/SapB transporter
24Dtpsy_35153763892..3766684 [-], 2793magnesium-translocating P-type ATPase
25Dtpsy_35163766681..3768189 [-], 1509RND efflux system, outer membrane lipoprotein, NodT family
26Dtpsy_35173768186..3771314 [-], 3129heavy metal efflux pump, CzcA family
27Dtpsy_35183771307..3772437 [-], 1131efflux transporter, RND family, MFP subunit
28Dtpsy_35193772578..3772898 [-], 321hypothetical protein
29Dtpsy_35203773366..3775333 [-], 1968conserved hypothetical proteinRelaxase, MOBL Family
30Dtpsy_35213775782..3776369 [-], 588TraF peptidase. Serine peptidase. MEROPS family S26CTraF, T4SS component 
31Dtpsy_35223776366..3776899 [-], 534conserved hypothetical protein
32Dtpsy_35233776896..3777168 [-], 273conserved hypothetical protein
33Dtpsy_35243777165..3777803 [-], 639Cobyrinic acid ac-diamide synthase
34Dtpsy_35263778057..3778914 [-], 858putative replication initiator and transcription repressor protein
35Dtpsy_35273778941..3779222 [-], 282conserved hypothetical protein
36Dtpsy_35283779306..3780067 [-], 762conserved hypothetical protein
37Dtpsy_35293780398..3780748 [-], 351putative lipoprotein
38Dtpsy_35303781007..3781300 [+], 294transcriptional regulator, XRE family
39Dtpsy_35313781660..3781974 [-], 315protein of unknown function DUF736TraF, T4SS component 
40Dtpsy_35333783077..3783286 [-], 210conserved hypothetical protein
41Dtpsy_35343783349..3785412 [-], 2064ParB domain protein nuclease
42Dtpsy_35353785493..3786323 [-], 831protein of unknown function DUF932
43Dtpsy_35363787063..3787413 [-], 351conserved hypothetical protein
44Dtpsy_35373787713..3788105 [-], 393conserved hypothetical protein
45Dtpsy_35383788381..3788890 [-], 510DNA repair protein RadC
46Dtpsy_35393789216..3790385 [-], 1170protein of unknown function DUF1016
47Dtpsy_35403790382..3791581 [-], 1200integrase family proteinIntegrase 
48Dtpsy_35413791916..3793502 [-], 1587extracellular solute-binding protein family 5
49Dtpsy_35423793633..3795342 [-], 1710YidC translocase/secretase
50Dtpsy_35433795339..3795635 [-], 297protein of unknown function DUF37
51Dtpsy_35443795632..3796105 [-], 474conserved hypothetical protein
52Dtpsy_35453796176..3796310 [-], 135ribosomal protein L34
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins46Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature