ICEberg
I. Information of ICE
ICEberg ID2
Name CTn341 This ICE is derived from experimental literature
FamilyCTnDOT/ERL
OrganismBacteroides fragilis
Size (bp)51993
GC content [Genome] (%)49.49
Insertion site-
FunctionTetracycline resistance
Species that ICE can be transferred toBacteroides spp.
Nucleotide SequenceAY515263 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..51993 
Putative oriT region -
Putative relaxase coordinates: 19916..21163;   Family:  MOBP


II. ICE interaction with IME/CIME/

The Interaction Network among ICE/IME/CIME


Detailed Informatioin of the Interaction Network
# ICE  Inter_Ele [Type] Methods Donors Recipients Exper_Ref 
1CTn341 Tn4555 [IME] experimentalin trans Bacteroides vulgatus Escherichia coli 14702313

experimental This is an interactioin derived from experimental literature



The graph information of CTn341 components from AY515263
Complete gene list of CTn341 from AY515263
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-1056..1451 [+], 396Ctn001
2-1465..1893 [+], 429Ctn002
3-1890..3173 [+], 1284Ctn003
4-3702..3950 [+], 249Ctn004
5yahA4004..4312 [+], 309YahA
6-4477..5112 [+], 636Ctn006
7lys5185..5712 [-], 528Lys
8traQ5709..6215 [-], 507TraQ
9traP6234..7112 [-], 879TraP
10traO7121..7696 [-], 576TraO
11traN7699..8685 [-], 987TraN
12traM8754..10103 [-], 1350TraM
13traL10084..10392 [-], 309TraL
14traK10398..11021 [-], 624TraK
15traJ11053..12057 [-], 1005TraJ
16traI12061..12690 [-], 630TraI
17traH12717..13106 [-], 390TraH
18traG13138..15822 [-], 2685TraG
19traF15639..15971 [-], 333TraF
20traE15982..16293 [-], 312TraE
21traD16494..17234 [-], 741TraD
22traC17231..17593 [-], 363TraC
23traB17617..18066 [-], 450TraB
24traA18072..18827 [-], 756TraA
25mobA19509..19937 [+], 429MobA
26mobB19916..21163 [+], 1248MobBRelaxase, MOBP Family
27mobC21194..23212 [+], 2019MobCT4CP 
28-23344..26598 [-], 3255Ctn028
29-26615..27745 [-], 1131Cnt029
30rteC28047..28700 [-], 654RteC
31-28891..29313 [-], 423Ctn031
32rteB29593..30915 [-], 1323RteB
33rteA30908..33226 [-], 2319RteA
34tetQ33226..35151 [-], 1926TetQAR 
35bmhA35809..44073 [-], 8265BmhA
36matR38561..40360 [-], 1800MatR
37-44063..44650 [-], 588Ctn038
38exc44678..46765 [-], 2088Exc
39-46826..48397 [-], 1572Ctn040
40-48418..48768 [-], 351Ctn041
41-48772..49134 [-], 363Ctn042
42-49336..49635 [+], 300Ctn043
43-49750..50001 [+], 252Ctn044
44rhuM50050..50412 [-], 363RhuM
45int50424..51659 [-], 1236IntIntegrase 
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins45Fasta
(1) Peed L; Parker AC; Smith CJ (2010). Genetic and functional analyses of the mob operon on conjugative transposon CTn341 from Bacteroides spp. J Bacteriol. 192(18):4643-50. [PudMed:20639338] experimental
(2) Bacic M; Parker AC; Stagg J; Whitley HP; Wells WG; Jacob LA; Smith CJ (2005). Genetic and structural analysis of the Bacteroides conjugative transposon CTn341. J Bacteriol. 187(8):2858-69. [PudMed:15805532] experimental
(3) Smith CJ; Parker AC; Bacic M (2001). Analysis of a Bacteroides conjugative transposon using a novel "targeted capture" model system. Plasmid. 46(1):47-56. [PudMed:11535035] experimental
 
experimental experimental literature