ICEberg
I. Information of ICE
ICEberg ID199
Name ICE(Tn4371)6040 This is a predicted ICE derived from literature
FamilyTn4371
OrganismBordetella petrii DSM 12804
Size (bp)47191
GC content [Genome] (%)63.74[65.48]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAM902716 (complete ICE sequence in this genome)
Replicon chromosome (5287950 bp, BioProject:28135) [NC_010170]
Genome coordinates2250540..2297731 
Putative oriT region -
Putative relaxase coordinates: 2270521..2272515; Locus tag: Bpet2190;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of ICE(Tn4371)6040 is not available.



The graph information of ICE(Tn4371)6040 components from AM902716
Complete gene list of ICE(Tn4371)6040 from AM902716
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1folC2245631..2246938 [+], 1308Folylpoly-gamma-glutamate synthetase / Dihydrofolate synthase
2Bpet21622246993..2247781 [+], 789putative membrane protein
3cvpA2247778..2248266 [+], 489colicin V production protein
4purF2248288..2249808 [+], 1521amidophosphoribosyltransferase
5dsbB2249869..2250336 [+], 468disulfide bond formation protein B
6int22250722..2251930 [+], 1209-Integrase 
7Bpet21672251969..2252328 [+], 360hypothetical protein
8Bpet21682252332..2252652 [+], 321putative DNA-binding protein
9Bpet21692252687..2253667 [+], 981hypothetical protein
10Bpet21702253636..2253884 [+], 249conserved hypothetical protein
11Bpet21712253871..2255667 [+], 1797conserved hypothetical protein
12radC22256002..2256400 [+], 399DNA repair protein radC homolog
13Bpet21732256792..2257142 [+], 351putative transposon
14Bpet21742257204..2258130 [-], 927hypothetical protein predicted by Glimmer/Critica
15Bpet21752258841..2259671 [+], 831conserved hypothetical protein
16Bpet21762259737..2261800 [+], 2064ParB-like nuclease
17Bpet21772261863..2262072 [+], 210conserved hypothetical protein
18Bpet21782262115..2262312 [+], 198hypothetical protein predicted by Glimmer/Critica
19Bpet21792262312..2263130 [+], 819unknown protein
20Bpet21802263932..2264246 [+], 315conserved hypothetical proteinTraF, T4SS component 
21Bpet21812264604..2264897 [-], 294predicted transcriptional regulator
22Bpet21822265103..2265450 [+], 348probable lipoprotein
23Bpet21832265793..2266584 [+], 792conserved hypothetical protein
24Bpet21842266653..2266949 [+], 297hypothetical protein
25Bpet21852266976..2267833 [+], 858hypothetical replication initiator and transcription repressor protein
26Bpet21862268087..2268725 [+], 639putative partition protein
27Bpet21872268722..2269006 [+], 285conserved hypothetical protein
28Bpet21882269003..2269548 [+], 546probable transposon
29traF12269545..2270144 [+], 600conjugal transfer protein TraFTraF, T4SS component 
30virD22270521..2272515 [+], 1995probable conjugal transfer protein VirD2Relaxase, MOBL Family
31fadA22272658..2273791 [-], 11343-ketoacyl-CoA thiolase
32Bpet21922274115..2275116 [-], 1002predicted oxidoreductase
33Bpet21932275144..2275611 [-], 468conserved hypothetical protein
34fadA32275624..2276808 [-], 1185-
35Bpet21952276828..2277355 [-], 528Hypothetical UPF0152 protein HI1161.
36Bpet21962277415..2277879 [+], 465transcriptional regulator, MarR family
37Bpet21972277876..2279153 [+], 1278putative transmembrane transport protein
38nerA2279204..2279434 [+], 231pseudogene
39Bpetpseudo_092279400..2279561 [+], 162pseudogene
40Bpet21982279687..2280583 [-], 897transcriptional regulator, LysR-family
41Bpet21992280769..2281881 [+], 1113putative threonine aldolase
42Bpet22002282008..2282391 [+], 384Probable tautomerase
43Bpet22012282366..2283625 [+], 1260probable MFS permease
44Bpet22022283682..2284626 [+], 945transcriptional regulator, LysR-family
45Bpet22032284623..2284901 [+], 279putative lipoprotein
46traG12285138..2287141 [+], 2004conjugal transfer protein TraGVirD4, T4SS component 
47Bpet22052287138..2287602 [+], 465putative DNA-binding protein
48trbB12287599..2288681 [+], 1083conjugal transfer protein TrbBTrbB, T4SS component 
49trbC12288678..2289070 [+], 393conjugal transfer protein TrbCTrbC, T4SS component 
50trbD12289067..2289339 [+], 273conjugal transfer protein TrbDTrbD, T4SS component 
51trbE12289352..2291817 [+], 2466conjugal transfer protein TrbETrbE, T4SS component 
52trbJ12291814..2292539 [+], 726conjugal transfer protein TrbJTrbJ, T4SS component 
53Bpet22112292551..2292835 [+], 285putative lipoproteinTrbJ, T4SS component 
54trbL12292832..2294202 [+], 1371conjugal transfer protein TrbLTrbL, T4SS component 
55trbF12294215..2294919 [+], 705conjugal transfer protein TrbFTrbF, T4SS component 
56trbG12294916..2295908 [+], 993conjugal transfer protein TrbGTrbG, T4SS component 
57trbI12295911..2297191 [+], 1281conjugal transfer protein TrbITrbI, T4SS component 
58Bpet22162297188..2297430 [+], 243hypothetical protein
59Bpet22172297655..2298419 [-], 765conserved hypothetical protein
60ugpQ2298435..2299205 [-], 771-
61Bpet22192299708..2301669 [+], 1962peptidyl-prolyl cis-trans isomerase D
62tesA2301654..2302286 [-], 633acyl-CoA thioesterase I precursor
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins53Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature