ICEberg
I. Information of ICE
ICEberg ID198
Name ICE(Tn4371)6039 This is a predicted ICE derived from literature
FamilyTn4371
OrganismAcidovorax sp. JS42
Size (bp)53489
GC content [Genome] (%)62.88[66.17]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000539 (complete ICE sequence in this genome)
Replicon chromosome (4448856 bp, BioProject:15685) [NC_008782]
Genome coordinates3075815..3129303 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICE(Tn4371)6039 is not available.



The graph information of ICE(Tn4371)6039 components from CP000539
Complete gene list of ICE(Tn4371)6039 from CP000539
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1Ajs_28973072923..3073810 [+], 888UDP-glucose pyrophosphorylase
2Ajs_28983073922..3074149 [-], 228SirA family protein
3Ajs_28993074155..3074718 [-], 564NUDIX hydrolase
4Ajs_29003074834..3075739 [-], 906cysteine synthase
5Ajs_29013076351..3076593 [-], 243conserved hypothetical protein
6Ajs_29023076590..3077852 [-], 1263conjugation TrbI family proteinTrbI, T4SS component 
7Ajs_29033077854..3078834 [-], 981Conjugal transfer protein TrbG/VirB9/CagXTrbG, T4SS component 
8Ajs_29043078831..3079535 [-], 705Conjugal transfer proteinTrbF, T4SS component 
9Ajs_29053079554..3080888 [-], 1335TrbL/VirB6 plasmid conjugal transfer proteinTrbL, T4SS component 
10Ajs_29063080885..3081208 [-], 324putative lipoproteinTrbJ, T4SS component 
11Ajs_29073081220..3081948 [-], 729putative conjugal transfer TrbJ signal peptide proteinTrbJ, T4SS component 
12Ajs_29083081945..3084380 [-], 2436AAA ATPaseTrbE, T4SS component 
13Ajs_29093084390..3084662 [-], 273putative conjugal transfer TrbD transmembrane proteinTrbD, T4SS component 
14Ajs_29103084659..3085036 [-], 378Conjugal transfer protein TrbCTrbC, T4SS component 
15Ajs_29113085033..3086067 [-], 1035type II secretion system protein ETrbB, T4SS component 
16Ajs_29123086064..3086510 [-], 447CopG domain protein DNA-binding domain protein
17Ajs_29133086507..3088504 [-], 1998TRAG family proteinVirD4, T4SS component 
18Ajs_29153088740..3089018 [-], 279putative lipoprotein
19Ajs_29163089151..3090665 [-], 1515transposase IS66
20Ajs_29173090746..3091057 [-], 312IS66 Orf2 family protein
21Ajs_29183091078..3091530 [-], 453transposase IS3/IS911 family protein
22Ajs_29193091527..3092432 [-], 906transcriptional regulator, LysR family
23Ajs_29203092469..3092786 [-], 318conserved hypothetical protein
24Ajs_29213092812..3093846 [-], 1035secretion protein HlyD family protein
25Ajs_29233094607..3095569 [-], 963transposase IS116/IS110/IS902 family protein
26Ajs_29243096608..3098143 [-], 1536RND efflux system, outer membrane lipoprotein, NodT family
27Ajs_29253098244..3099023 [+], 780transcriptional regulator, TetR family
28Ajs_29263099023..3099514 [+], 492transcriptional regulator, MarR family
29Ajs_29273099511..3100470 [+], 960transposase, IS4 family
30Ajs_29293103047..3103658 [-], 612conjugation peptidase TraFTraF, T4SS component 
31Ajs_29303103655..3104200 [-], 546conserved hypothetical protein
32Ajs_29313104197..3104472 [-], 276plasmid segregation centromere-binding protein ParG
33Ajs_29323104469..3105107 [-], 639plasmid segregation oscillating ATPase ParF
34Ajs_29333105361..3106218 [-], 858conserved hypothetical replication initiator and transcription repressor protein
35Ajs_29343106245..3106565 [-], 321conserved hypothetical protein
36Ajs_29353106634..3107383 [-], 750conserved hypothetical protein
37Ajs_29363107725..3108072 [-], 348putative lipoprotein
38Ajs_29373108295..3108588 [+], 294helix-turn-helix domain protein
39Ajs_29383108818..3109861 [+], 1044conserved hypothetical protein
40Ajs_29393110204..3110518 [-], 315protein of unknown function DUF736TraF, T4SS component 
41Ajs_29413111327..3112142 [-], 816hypothetical protein
42Ajs_29423112382..3112591 [-], 210conserved hypothetical protein
43Ajs_29433112655..3114706 [-], 2052ParB domain protein nuclease
44Ajs_29443114781..3115608 [-], 828protein of unknown function DUF932
45Ajs_29463116240..3116488 [-], 249hypothetical protein
46Ajs_29473116573..3117457 [+], 885ATPase involved in chromosome partitioning-like protein
47Ajs_29483117454..3117897 [+], 444hypothetical protein
48Ajs_29493118086..3118799 [+], 714conserved hypothetical protein
49Ajs_29503118990..3120165 [+], 11763'-phosphoadenosine 5'-phosphosulfate sulfotransferase
50Ajs_29513120162..3120362 [+], 201hypothetical protein
51Ajs_29523120378..3122429 [+], 2052hypothetical protein
52Ajs_29533122618..3123988 [+], 1371hypothetical proteinT4CP 
53Ajs_29543123985..3124947 [+], 963transposase, IS4 family
54Ajs_29553125159..3125647 [+], 489hypothetical protein
55Ajs_29563125647..3126864 [+], 1218conserved hypothetical protein
56Ajs_29573127020..3127334 [-], 315putative transcriptional regulator
57Ajs_29583127312..3127662 [-], 351protein of unknown function DUF891
58Ajs_29593127686..3129020 [-], 1335phage integrase family proteinIntegrase 
59Ajs_29603129524..3129895 [+], 372hypothetical protein
60Ajs_29613129919..3130179 [+], 261bacterial translation initiation factor 1 (bIF-1)
61Ajs_29623130256..3130564 [+], 309RNP-1 like RNA-binding protein
62Ajs_29633130811..3131299 [-], 489conserved hypothetical protein
63Ajs_29643131303..3132085 [-], 783short-chain dehydrogenase/reductase SDR
64Ajs_29653132097..3132633 [-], 537lipoprotein, putative
65Ajs_29663132630..3133949 [-], 1320major facilitator superfamily MFS_1
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins54Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature