ICEberg
I. Information of ICE
ICEberg ID197
Name ICE(Tn4371)6038 This is a predicted ICE derived from literature
FamilyTn4371
OrganismComamonas testosteroni KF-1
Size (bp)52455
GC content [Genome] (%)63.78
Insertion siteTTTTTCAT
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAAUJ02000001 (complete ICE sequence in this contig)
Replicon-
Coordinates3228493..3280947 
Putative oriT region -
Putative relaxase coordinates: 3256324..3258300; Locus tag: CtesDRAFT_PD2984;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of ICE(Tn4371)6038 is not available.



The graph information of ICE(Tn4371)6038 components from AAUJ02000001
Complete gene list of ICE(Tn4371)6038 from AAUJ02000001
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1CtesDRAFT_PD29523223496..3224206 [-], 711ABC transporter related
2CtesDRAFT_PD29533224208..3225413 [-], 1206protein of unknown function DUF214
3CtesDRAFT_PD29543225410..3226561 [-], 1152efflux transporter, RND family, MFP subunit
4CtesDRAFT_PD29553226558..3227166 [-], 609transcriptional regulator, TetR family
5CtesDRAFT_PD29563227564..3227818 [+], 255SCO1/SenC family protein
6CtesDRAFT_PD29573227845..3228324 [+], 480protein of unknown function DUF461
7CtesDRAFT_PD29583228441..3228716 [-], 276conserved hypothetical protein
8CtesDRAFT_PD29593228713..3229981 [-], 1269conjugation TrbI family proteinTrbI, T4SS component 
9CtesDRAFT_PD29603229984..3230985 [-], 1002P-type conjugative transfer protein TrbGTrbG, T4SS component 
10CtesDRAFT_PD29613230982..3231686 [-], 705Conjugal transfer proteinTrbF, T4SS component 
11CtesDRAFT_PD29623231705..3233057 [-], 1353P-type conjugative transfer protein TrbLTrbL, T4SS component 
12CtesDRAFT_PD29633233054..3233380 [-], 327putative lipoproteinTrbJ, T4SS component 
13CtesDRAFT_PD29643233392..3234147 [-], 756P-type conjugative transfer protein TrbJTrbJ, T4SS component 
14CtesDRAFT_PD29653234144..3236615 [-], 2472AAA ATPaseTrbE, T4SS component 
15CtesDRAFT_PD29663236630..3236902 [-], 273putative conjugal transfer TrbD transmembrane proteinTrbD, T4SS component 
16CtesDRAFT_PD29673236899..3237285 [-], 387Conjugal transfer protein TrbCTrbC, T4SS component 
17CtesDRAFT_PD29683237282..3238331 [-], 1050P-type conjugative transfer ATPase TrbBTrbB, T4SS component 
18CtesDRAFT_PD29693238328..3238792 [-], 465CopG domain protein DNA-binding domain protein
19CtesDRAFT_PD29703238789..3240798 [-], 2010TRAG family proteinVirD4, T4SS component 
20CtesDRAFT_PD29713241015..3241242 [-], 228conserved hypothetical protein
21CtesDRAFT_PD29723241268..3241819 [-], 552LysR family transcriptional regulator
22CtesDRAFT_PD29733242659..3244332 [-], 1674sulfatase
23CtesDRAFT_PD29743244329..3245111 [-], 783conserved hypothetical protein
24CtesDRAFT_PD29753245098..3246396 [-], 1299outer membrane efflux protein
25CtesDRAFT_PD29763246393..3246713 [-], 321conserved hypothetical protein
26CtesDRAFT_PD29773246710..3249805 [-], 3096heavy metal efflux pump, CzcA family
27CtesDRAFT_PD29783249819..3251111 [-], 1293efflux transporter, RND family, MFP subunit
28CtesDRAFT_PD29793251352..3251906 [+], 555cytochrome B561
29CtesDRAFT_PD29803251948..3252655 [+], 708protein of unknown function DUF125 transmembrane
30CtesDRAFT_PD29813252669..3254081 [-], 1413histidine kinase
31CtesDRAFT_PD29823254085..3254750 [-], 666two component transcriptional regulator, winged helix family
32CtesDRAFT_PD29833254765..3256108 [-], 1344Ferric reductase domain protein transmembrane component domain
33CtesDRAFT_PD29843256324..3258300 [-], 1977conserved hypothetical proteinRelaxase, MOBL Family
34CtesDRAFT_PD29853258374..3258751 [-], 378conserved hypothetical protein
35CtesDRAFT_PD29863258748..3259335 [-], 588TraF peptidase. Serine peptidase. MEROPS family S26CTraF, T4SS component 
36CtesDRAFT_PD29873259332..3259856 [-], 525conserved hypothetical protein
37CtesDRAFT_PD29883259853..3260116 [-], 264conserved hypothetical protein
38CtesDRAFT_PD29893260113..3260751 [-], 639Cobyrinic acid ac-diamide synthase
39CtesDRAFT_PD29903261005..3261862 [-], 858conserved hypothetical replication initiator and transcription repressor protein
40CtesDRAFT_PD29913261889..3262170 [-], 282conserved hypothetical protein
41CtesDRAFT_PD29923262254..3263003 [-], 750conserved hypothetical protein
42CtesDRAFT_PD29933263346..3263693 [-], 348putative lipoprotein
43CtesDRAFT_PD29943263917..3264210 [+], 294helix-turn-helix domain protein
44CtesDRAFT_PD29953264564..3264878 [-], 315protein of unknown function DUF736TraF, T4SS component 
45CtesDRAFT_PD29963265592..3266218 [+], 627GCN5-related N-acetyltransferase
46CtesDRAFT_PD29973266349..3266558 [-], 210conserved hypothetical protein
47CtesDRAFT_PD29983266621..3268687 [-], 2067ParB domain protein nuclease
48CtesDRAFT_PD29993268763..3269590 [-], 828protein of unknown function DUF932
49CtesDRAFT_PD30003270527..3270826 [+], 300conserved hypothetical protein
50CtesDRAFT_PD30013270969..3271247 [-], 279conserved hypothetical protein
51CtesDRAFT_PD30023271311..3271661 [-], 351conserved hypothetical protein
52CtesDRAFT_PD30033272038..3273108 [-], 1071conserved hypothetical protein
53CtesDRAFT_PD30043273154..3275409 [-], 2256UBA/THIF-type NAD/FAD binding protein
54CtesDRAFT_PD30053275406..3276599 [-], 1194conserved hypothetical protein
55CtesDRAFT_PD30063276689..3277591 [+], 903conserved hypothetical protein
56CtesDRAFT_PD30073277598..3278386 [+], 789conserved hypothetical protein
57CtesDRAFT_PD30083278432..3279568 [-], 1137protein of unknown function DUF1016
58CtesDRAFT_PD30093279565..3280764 [-], 1200integrase family proteinIntegrase 
59CtesDRAFT_PD30103280987..3281415 [-], 429conserved hypothetical protein
60CtesDRAFT_PD30113281533..3282987 [-], 1455cobyric acid synthase CobQ
61CtesDRAFT_PD30123282991..3283392 [-], 402conserved hypothetical protein
62CtesDRAFT_PD30133283379..3284233 [-], 855conserved hypothetical protein
63CtesDRAFT_PD30143284230..3285237 [-], 1008aminotransferase class I and II
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins51Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature