ICEberg
I. Information of ICE
ICEberg ID196
Name ICE(Tn4371)6037 This is a predicted ICE derived from literature
FamilyTn4371
OrganismDelftia acidovorans SPH-1
Size (bp)57901
GC content [Genome] (%)63.66[66.48]
Insertion siteTTTTTCAT
Function-
Species that ICE can be transferred to-
Nucleotide SequenceCP000884 (complete ICE sequence in this genome)
Replicon chromosome (6767514 bp, BioProject:17413) [NC_010002]
Genome coordinates2958779..3016679 
Putative oriT region -
Putative relaxase coordinates: 2986644..2989025; Locus tag: Daci_2716;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of ICE(Tn4371)6037 is not available.



The graph information of ICE(Tn4371)6037 components from CP000884
Complete gene list of ICE(Tn4371)6037 from CP000884
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1Daci_26832953842..2954552 [-], 711ABC transporter related
2Daci_26842954554..2955759 [-], 1206protein of unknown function DUF214
3Daci_26852955756..2956907 [-], 1152efflux transporter, RND family, MFP subunit
4Daci_26862956904..2957512 [-], 609transcriptional regulator, TetR family
5Daci_26872957910..2958164 [+], 255SCO1/SenC family protein
6Daci_26882958191..2958670 [+], 480protein of unknown function DUF461
7Daci_26892958787..2959062 [-], 276conserved hypothetical protein
8Daci_26902959059..2960327 [-], 1269conjugation TrbI family proteinTrbI, T4SS component 
9Daci_26912960330..2961331 [-], 1002P-type conjugative transfer protein TrbGTrbG, T4SS component 
10Daci_26922961328..2962032 [-], 705Conjugal transfer proteinTrbF, T4SS component 
11Daci_26932962051..2963403 [-], 1353P-type conjugative transfer protein TrbLTrbL, T4SS component 
12Daci_26942963400..2963726 [-], 327putative lipoproteinTrbJ, T4SS component 
13Daci_26952963738..2964493 [-], 756P-type conjugative transfer protein TrbJTrbJ, T4SS component 
14Daci_26962964490..2966961 [-], 2472AAA ATPaseTrbE, T4SS component 
15Daci_26972966976..2967248 [-], 273putative conjugal transfer TrbD transmembrane proteinTrbD, T4SS component 
16Daci_26982967245..2967622 [-], 378Conjugal transfer protein TrbCTrbC, T4SS component 
17Daci_26992967619..2968653 [-], 1035P-type conjugative transfer ATPase TrbBTrbB, T4SS component 
18Daci_27002968650..2969114 [-], 465CopG domain protein DNA-binding domain protein
19Daci_27012969111..2971120 [-], 2010TRAG family proteinVirD4, T4SS component 
20Daci_27022971337..2971492 [-], 156putative lipoprotein
21Daci_27032971590..2972504 [-], 915transcriptional regulator, LysR family
22Daci_27042972547..2972969 [-], 423diacylglycerol kinase
23Daci_27052972981..2974654 [-], 1674sulfatase
24Daci_27062974651..2975433 [-], 783conserved hypothetical protein
25Daci_27072975420..2976667 [-], 1248outer membrane efflux protein
26Daci_27082976715..2977035 [-], 321conserved hypothetical protein
27Daci_27092977032..2980127 [-], 3096heavy metal efflux pump, CzcA family
28Daci_27102980141..2981364 [-], 1224efflux transporter, RND family, MFP subunit
29Daci_27112981675..2982226 [+], 552cytochrome B561
30Daci_27122982268..2982975 [+], 708protein of unknown function DUF125 transmembrane
31Daci_27132982989..2984401 [-], 1413histidine kinase
32Daci_27142984405..2985070 [-], 666two component transcriptional regulator, winged helix family
33Daci_27152985085..2986428 [-], 1344Ferric reductase domain protein transmembrane component domain
34Daci_27162986644..2989025 [-], 2382conserved hypothetical proteinRelaxase, MOBL Family
35Daci_27172989087..2989674 [-], 588putative conjugal transfer TRAF transmembrane proteinTraF, T4SS component 
36Daci_27182989671..2990195 [-], 525conserved hypothetical protein
37Daci_27192990192..2990455 [-], 264conserved hypothetical protein
38Daci_27202990452..2991090 [-], 639Cobyrinic acid ac-diamide synthase
39Daci_27212991344..2992201 [-], 858conserved hypothetical replication initiator and transcription repressor protein
40Daci_27222992228..2992524 [-], 297conserved hypothetical protein
41Daci_27232992818..2993123 [+], 306conserved hypothetical protein
42Daci_27242993131..2994531 [+], 1401integrase family protein
43Daci_27252994541..2997150 [+], 2610integrase family protein
44Daci_27262997147..2997827 [+], 681alpha/beta hydrolase fold
45Daci_27272997973..2998737 [-], 765conserved hypothetical protein
46Daci_27282999079..2999426 [-], 348putative lipoprotein
47Daci_27292999650..2999943 [+], 294helix-turn-helix domain protein
48Daci_27303000297..3000611 [-], 315protein of unknown function DUF736TraF, T4SS component 
49Daci_27313001433..3001951 [+], 519GCN5-related N-acetyltransferase
50Daci_27323002082..3002357 [-], 276hypothetical protein
51Daci_27333002354..3004420 [-], 2067ParB domain protein nuclease
52Daci_27343004496..3005323 [-], 828protein of unknown function DUF932
53Daci_27353005848..3006111 [+], 264hypothetical protein
54Daci_27363006259..3006558 [+], 300conserved hypothetical protein
55Daci_27373006701..3006979 [-], 279conserved hypothetical protein
56Daci_27383007043..3007393 [-], 351conserved hypothetical protein
57Daci_27393007770..3008885 [-], 1116hypothetical protein
58Daci_27403008886..3011141 [-], 2256UBA/THIF-type NAD/FAD binding protein
59Daci_27413011138..3012331 [-], 1194conserved hypothetical protein
60Daci_27423012421..3013323 [+], 903conserved hypothetical protein
61Daci_27433013330..3014118 [+], 789conserved hypothetical protein
62Daci_27443014164..3015300 [-], 1137protein of unknown function DUF1016
63Daci_27453015297..3016544 [-], 1248integrase family proteinIntegrase 
64Daci_27463016730..3017338 [-], 609conserved hypothetical protein
65Daci_27473017570..3019570 [+], 2001acetate--CoA ligase
66Daci_27483019746..3020228 [+], 483conserved hypothetical protein
67Daci_27493020330..3020638 [-], 309cytochrome c class I
68Daci_27503020742..3020984 [+], 243conserved hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins57Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature