ICEberg
I. Information of ICE
ICEberg ID192
Name ICE(Tn4371)6033 This is a predicted ICE derived from literature
FamilyTn4371
OrganismRalstonia pickettii 12J
Size (bp)54121
GC content [Genome] (%)64.63[63.43]
Insertion siteTTTTTCAT
Functionbeta-lactamase
Species that ICE can be transferred to-
Nucleotide SequenceCP001068 (complete ICE sequence in this genome)
Replicon chromosome 1 (3942557 bp, BioProject:17631) [NC_010682]
Genome coordinates2715199..2769318 
Putative oriT region -
Putative relaxase coordinates: 2737800..2739782; Locus tag: Rpic_2625;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of ICE(Tn4371)6033 is not available.



The graph information of ICE(Tn4371)6033 components from CP001068
Complete gene list of ICE(Tn4371)6033 from CP001068
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1Rpic_25972711130..2712917 [-], 1788surface antigen (D15)
2Rpic_25982713155..2713343 [+], 189conserved hypothetical protein
3Rpic_25992713383..2714264 [+], 882chromosome segregation and condensation protein ScpA
4Rpic_26002714303..2715154 [+], 852pantoate/beta-alanine ligase
5Rpic_26012715382..2716581 [+], 1200integrase family proteinIntegrase 
6Rpic_26022716578..2717714 [+], 1137protein of unknown function DUF1016
7Rpic_26032717760..2718548 [-], 789conserved hypothetical protein
8Rpic_26042718555..2719457 [-], 903conserved hypothetical protein
9Rpic_26052719547..2720740 [+], 1194conserved hypothetical protein
10Rpic_26062720737..2722992 [+], 2256UBA/THIF-type NAD/FAD binding protein
11Rpic_26072723038..2724108 [+], 1071conserved hypothetical protein
12Rpic_26082724485..2724835 [+], 351conserved hypothetical protein
13Rpic_26092724899..2725177 [+], 279conserved hypothetical protein
14Rpic_26102725320..2725619 [-], 300conserved hypothetical protein
15Rpic_26112726555..2727379 [+], 825protein of unknown function DUF932
16Rpic_26122727445..2729484 [+], 2040ParB domain protein nuclease
17Rpic_26132729547..2729756 [+], 210conserved hypothetical protein
18Rpic_26142729973..2730434 [+], 462conserved hypothetical protein
19Rpic_26152731222..2731536 [+], 315protein of unknown function DUF736TraF, T4SS component 
20Rpic_26162731902..2732195 [-], 294helix-turn-helix domain protein
21Rpic_26172732419..2732766 [+], 348putative lipoprotein
22Rpic_26182733108..2733857 [+], 750conserved hypothetical protein
23Rpic_26192733941..2734222 [+], 282conserved hypothetical protein
24Rpic_26202734249..2735097 [+], 849conserved hypothetical replication initiator and transcription repressor protein
25Rpic_26212735351..2735989 [+], 639Cobyrinic acid ac-diamide synthase
26Rpic_26222735986..2736249 [+], 264conserved hypothetical protein
27Rpic_26232736246..2736779 [+], 534conserved hypothetical protein
28Rpic_26242736776..2737363 [+], 588putative conjugal transfer TRAF transmembrane proteinTraF, T4SS component 
29Rpic_26252737800..2739782 [+], 1983conserved hypothetical proteinRelaxase, MOBL Family
30Rpic_26272740659..2741441 [-], 783short-chain dehydrogenase/reductase SDR
31Rpic_26282741476..2742261 [-], 786Enoyl-CoA hydratase/isomerase
32Rpic_26292742273..2743454 [-], 1182acetyl-CoA acetyltransferase
33Rpic_26302743483..2745159 [-], 1677AMP-dependent synthetase and ligase
34Rpic_26312745171..2746220 [-], 1050L-carnitine dehydratase/bile acid-inducible protein F
35Rpic_26322746223..2747368 [-], 1146acyl-CoA dehydrogenase domain protein
36Rpic_26332747563..2748591 [+], 1029transcriptional regulator, AraC family
37Rpic_26342748564..2748671 [-], 108hypothetical protein
38Rpic_26352748939..2749988 [+], 1050beta-lactamase domain protein
39Rpic_26362750177..2750455 [-], 279transposase family protein
40Rpic_26372750723..2752090 [+], 1368major facilitator superfamily MFS_1
41Rpic_26382752115..2753896 [+], 1782acyl-CoA dehydrogenase domain protein
42Rpic_26392753921..2754670 [+], 750Electron transfer flavoprotein alpha/beta-subunit
43Rpic_26402754671..2755603 [+], 933Electron transfer flavoprotein alpha subunit
44Rpic_26412755621..2756535 [+], 915transcriptional regulator, LysR family
45Rpic_26422756561..2756791 [+], 231conserved hypothetical protein
46Rpic_26432757009..2759027 [+], 2019TRAG family proteinVirD4, T4SS component 
47Rpic_26442759024..2759488 [+], 465CopG domain protein DNA-binding domain protein
48Rpic_26452759485..2760522 [+], 1038P-type conjugative transfer ATPase TrbBTrbB, T4SS component 
49Rpic_26462760519..2760911 [+], 393Conjugal transfer protein TrbCTrbC, T4SS component 
50Rpic_26472760908..2761192 [+], 285putative conjugal transfer TrbD transmembrane proteinTrbD, T4SS component 
51Rpic_26482761212..2763689 [+], 2478AAA ATPaseTrbE, T4SS component 
52Rpic_26492763686..2764441 [+], 756P-type conjugative transfer protein TrbJTrbJ, T4SS component 
53Rpic_26502764454..2765806 [+], 1353P-type conjugative transfer protein TrbLTrbL, T4SS component 
54Rpic_26512765825..2766529 [+], 705Conjugal transfer proteinTrbF, T4SS component 
55Rpic_26522766526..2767521 [+], 996P-type conjugative transfer protein TrbGTrbG, T4SS component 
56Rpic_26532767524..2768795 [+], 1272conjugation TrbI family proteinTrbI, T4SS component 
57Rpic_26542768792..2769037 [+], 246conserved hypothetical protein
58Rpic_26552769315..2769980 [-], 666putative partition-related protein
59Rpic_26562770055..2771551 [-], 1497cobyric acid synthase CobQ
60Rpic_26572771613..2772188 [+], 576Adenosylcobinamide-phosphate guanylyltransferase
61Rpic_26582772185..2773165 [+], 981cobalamin biosynthesis protein CobD
62Rpic_26592773162..2774169 [+], 1008L-threonine-O-3-phosphate decarboxylase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins53Fasta
(1) Ryan MP; Pembroke JT; Adley CC (2009). Novel Tn4371-ICE like element in Ralstonia pickettii and genome mining for comparative elements. BMC Microbiol. 0.543055556. [PudMed:19941653] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature