ICEberg
I. Information of ICE
ICEberg ID188
Name 370-RD.1 This is a predicted ICE derived from literature
Family10270-RD.1
OrganismBradyrhizobium japonicum USDA 110
Size (bp)9782
GC content [Genome] (%)31.89[38.51]
Insertion site-
FunctionSrtA required for cell wall anchoring of protein A as well as virulence
Species that ICE can be transferred to-
Nucleotide SequenceAE004092 (complete ICE sequence in this genome)
Replicon chromosome (1852441 bp, BioProject:269) [NC_002737]
Genome coordinates884024..893806 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of 370-RD.1 is not available.



The graph information of 370-RD.1 components from AE004092
Complete gene list of 370-RD.1 from AE004092
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SPy_1070879378..880787 [+], 1410putative dipeptidase
2thdF880855..882231 [-], 1377putative thiophene degradation protein F
3rplJ882564..883064 [+], 50150S ribosomal protein L10
4rplL883129..883494 [+], 36650S ribosomal protein L7/L12
5SPy_1075884024..884392 [+], 369conserved hypothetical protein
6SPy_1077884567..884890 [+], 324putative methyl transferase
7srtI885728..886375 [+], 648protein involved in lantibiotic (srt) production
8srtR886526..887212 [+], 687putative DNA binding regulatory protein - lantibiotic associated
9srtK887205..888551 [+], 1347putative histidine kinase - lantibiotic associated
10srtA888699..888839 [+], 141lantibiotic precursor
11srtT888954..889571 [+], 618ABC transporter (ATP binding) - lantibiotic associated
12srtF889653..890342 [+], 690ABC transporter (ATP-binding) - lantibiotic associated
13srtE890348..891097 [+], 750conserved hypothetical protein - lantibiotic associated
14srtG891100..891822 [+], 723conserved hypothetical protein - lantibiotics associated
15SPy_1088892014..892232 [+], 219putative repressor protein - phage associated
16SPy_1093894068..895303 [+], 1236putative D,D-carboxypeptidase, penicillin-binding protein
17SPy_1094895420..896382 [-], 963conserved hypothetical protein
18folC.1896714..897991 [+], 1278putative folyl-polyglutamate synthetase
19folE898002..898604 [+], 603GTP cyclohydrolase
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins11Fasta
(1) Beres SB; Musser JM (2007). Contribution of exogenous genetic elements to the group A Streptococcus metagenome. PLoS One. 2(8):e800. [PudMed:17726530]