ICEberg
I. Information of ICE
ICEberg ID18
Name ICEVchInd1 This ICE is derived from experimental literature
FamilySXT/R391
OrganismVibrio cholerae O1 BI142
Size (bp)-
GC content [Genome] (%)-
Insertion siteprfC
FunctionTrimethoprim-sulfamethoxazole resistence
Species that ICE can be transferred to-
Nucleotide SequenceEF434308; EF434290 (partial ICE sequence)
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of ICEVchInd1 is not available.



The graph information of ICEVchInd1 components from EF434290
Incomplete gene list of ICEVchInd1 from EF434290
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1traG1..144 [+], 144TraGTraG_F, T4SS component 


The graph information of ICEVchInd1 components from EF434308
Incomplete gene list of ICEVchInd1 from EF434308
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1eexR11..432 [+], 432EexR1
 
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences0Fasta
Proteins0Fasta
(1) Bordeleau E; Brouillette E; Robichaud N; Burrus V (2010). Beyond antibiotic resistance: integrating conjugative elements of the SXT/R391 family that encode novel diguanylate cyclases participate to c-di-GMP signalling in Vibrio cholerae. Environ Microbiol. 12(2):510-23. [PudMed:19888998] experimental
(2) Marrero J; Waldor MK (2007). The SXT/R391 family of integrative conjugative elements is composed of two exclusion groups. J Bacteriol. 189(8):3302-5. [PudMed:17307849] experimental
 
experimental experimental literature