ICEberg
I. Information of ICE
ICEberg ID176
Name PAGI-5 This ICE is derived from experimental literature
FamilyPAPI-1
OrganismPseudomonas aeruginosa PSE9
Size (bp)99276
GC content [Genome] (%)59.62
Insertion sitetRNA-Lys (Lys47)
FunctionVirulence determinants
Species that ICE can be transferred to-
Nucleotide SequenceEF611301 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..99276 
Putative oriT region -
Putative relaxase coordinates: 1439..3358;   Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of PAGI-5 is not available.



The graph information of PAGI-5 components from EF611301
Complete gene list of PAGI-5 from EF611301
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-162..1442 [-], 1281tyrosine recombinase xerC-like protein
2-1439..3358 [-], 1920hypothetical proteinRelaxase, MOBH Family
3-3607..3705 [-], 99hypothetical protein
4-3877..5139 [-], 1263hypothetical protein
5-5620..7653 [+], 2034hypothetical protein
6-7949..8260 [-], 312hypothetical protein
7-8336..9391 [+], 1056hypothetical protein
8-9810..10160 [-], 351putative transcriptional regulator
9-10164..10436 [-], 273putative transcriptional regulator
10-10620..10883 [+], 264insertion sequence IS407 OrfA
11-11113..11766 [+], 654insertion sequence IS407 OrfBIntegrase 
12-11803..12156 [+], 354hypothetical protein
13-12186..13721 [-], 1536hypothetical proteinTfc19, T4SS component 
14-13718..14065 [-], 348hypothetical protein
15-14065..15447 [-], 1383hypothetical proteinTfc22, T4SS component 
16-15471..16409 [-], 939hypothetical proteinTfc23, T4SS component 
17-16409..16840 [-], 432hypothetical proteinTfc24, T4SS component 
18-18978..19196 [+], 219hypothetical protein
19-19193..19852 [-], 660hypothetical protein
20-19849..20133 [-], 285hypothetical protein
21-20130..22934 [-], 2805hypothetical proteinTfc16, T4SS component 
22-23072..23419 [-], 348hypothetical proteinTfc15, T4SS component 
23-23493..24998 [-], 1506hypothetical proteinTfc14, T4SS component 
24-24982..25866 [-], 885hypothetical proteinTfc13, T4SS component 
25-25863..26522 [-], 660hypothetical proteinTfc12, T4SS component 
26-26519..26905 [-], 387hypothetical proteinTfc11, T4SS component 
27-26916..27272 [-], 357hypothetical proteinTfc10, T4SS component 
28-27290..27529 [-], 240hypothetical protein
29-27526..27864 [-], 339hypothetical proteinTfc9, T4SS component 
30-27957..28256 [-], 300hypothetical protein
31-28785..29894 [-], 1110hypothetical protein
32-30026..31507 [-], 1482hypothetical proteinTraI_F, T4SS component 
33-31518..32264 [-], 747hypothetical proteinTfc8, T4SS component 
34-32264..34495 [-], 2232hypothetical proteinTfc6, T4SS component 
35-34499..34768 [-], 270hypothetical protein
36-34777..35277 [-], 501hypothetical proteinTfc5, T4SS component 
37-35274..35855 [-], 582hypothetical proteinTfc4, T4SS component 
38-35840..36595 [-], 756hypothetical proteinTfc3, T4SS component 
39-36606..37295 [-], 690hypothetical proteinTfc2, T4SS component 
40-37513..37785 [+], 273hypothetical protein
41-38352..38489 [+], 138hypothetical protein
42-38591..38749 [+], 159hypothetical protein
43-38954..39346 [-], 393hypothetical protein
44-39698..39901 [-], 204hypothetical protein
45-39898..40494 [-], 597hypothetical protein
46-40887..41069 [+], 183hypothetical protein
47-41088..41462 [-], 375hypothetical protein
48-42326..43009 [-], 684hypothetical protein
49-43114..43545 [+], 432hypothetical protein
50-43532..43672 [+], 141hypothetical protein
51-43770..44927 [+], 1158hypothetical protein
52-44938..46554 [+], 1617hypothetical protein
53-46544..48388 [+], 1845site-specific recombinase
54-48385..48813 [+], 429TetR family transcriptional regulator-like protein
55-49052..49234 [+], 183hypothetical protein
56-49377..49787 [-], 411mercuric resistance operon regulatory protein
57-49859..50209 [+], 351mercuric transport protein
58-50223..50498 [+], 276copper-transporting ATPase 2
59-50511..50945 [+], 435inner membrane Hg(II) uptake protein
60-50978..52660 [+], 1683mercuric reductase
61-52679..53095 [+], 417hypothetical protein
62-53506..54660 [+], 1155DNA-directed DNA polymerase
63-55297..57546 [-], 2250putative helicase
64-57652..59097 [-], 1446hypothetical protein
65-59127..59732 [-], 606hypothetical protein
66-59824..60078 [-], 255hypothetical protein
67-60146..60508 [-], 363hypothetical protein
68-60611..61381 [-], 771hypothetical protein
69-61438..61788 [-], 351hypothetical protein
70-62024..62731 [-], 708hypothetical protein
71-62833..63123 [-], 291hypothetical protein
72-63216..63449 [-], 234hypothetical protein
73-63487..63645 [-], 159hypothetical protein
74-63782..64270 [-], 489hypothetical protein
75-64595..64729 [-], 135hypothetical protein
76-64731..64907 [-], 177hypothetical protein
77-64982..65371 [-], 390hypothetical protein
78-65566..65742 [+], 177hypothetical protein
79-65901..65990 [+], 90hypothetical protein
80-66286..66723 [-], 438putative PilM
81-66752..68080 [-], 1329putative PilV
82-68085..69026 [-], 942putative PilUTraJ_I, T4SS component 
83-69023..69553 [-], 531putative PilS2
84-69575..69673 [-], 99hypothetical protein
85-69670..70656 [-], 987hypothetical protein
86-70656..71276 [-], 621putative PilQ2TrbB, T4SS component 
87-71332..72237 [-], 906putative PilQ
88-72246..72779 [-], 534putative PilP
89-72769..74094 [-], 1326putative PilO2
90-74098..75807 [-], 1710putative PilN
91-75807..76931 [-], 1125putative PilLTfc2, T4SS component 
92-77019..78992 [-], 1974putative DNA helicase
93-78989..80878 [-], 1890hypothetical protein
94-80990..81742 [-], 753hypothetical protein
95-81751..83670 [-], 1920DNA topoisomerase I
96-84197..84391 [-], 195hypothetical protein
97-84495..84983 [-], 489single-stranded DNA-binding protein 2
98-84997..85530 [-], 534hypothetical protein
99-85536..86264 [-], 729hypothetical protein
100-86421..86618 [-], 198hypothetical protein
101-86966..87205 [-], 240hypothetical protein
102-87196..87555 [-], 360hypothetical protein
103-87806..88732 [-], 927hypothetical protein
104-88698..88880 [-], 183hypothetical protein
105-88877..89644 [-], 768hypothetical protein
106-89672..89764 [-], 93hypothetical protein
107-89775..91409 [-], 1635hypothetical protein
108-91406..91675 [-], 270putative DNA binding protein
109-91696..92157 [-], 462hypothetical protein
110-92157..92390 [-], 234hypothetical protein
111-92383..92622 [-], 240hypothetical protein
112-92615..92872 [-], 258hypothetical protein
113-92869..93396 [-], 528hypothetical protein
114-93386..93571 [-], 186hypothetical protein
115-93568..94914 [-], 1347replicative DNA helicase
116-94962..95663 [-], 702hypothetical protein
117-95663..96349 [-], 687hypothetical protein
118-96346..97056 [-], 711hypothetical protein
119-97062..97559 [-], 498hypothetical protein
120-97556..98293 [-], 738hypothetical protein
121-98295..99161 [-], 867Soj
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins121Fasta
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