ICEberg
I. Information of ICE
ICEberg ID174
Name PAGI-2 This ICE is derived from experimental literature
FamilyICEclc
OrganismPseudomonas aeruginosa C
Size (bp)104955
GC content [Genome] (%)64.71
Insertion sitetRNA-Gly
FunctionTransport of heavy metals and ions, cytochrome c biogenesis, mercury resistance
Species that ICE can be transferred to-
Nucleotide SequenceAF440523 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates27286..132240 
Putative oriT region -
Putative relaxase coordinates: 63484..65376; Gene: ORF C36;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of PAGI-2 is not available.



The graph information of PAGI-2 components from AF440523
Complete gene list of PAGI-2 from AF440523
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1int27514..29445 [+], 1932putative integraseIntegrase 
2ORF C229645..30301 [-], 657conserved hypothetical protein
3ORF C330421..30714 [+], 294conserved hypothetical protein
4bphR30736..31626 [-], 891putative transcriptional regulator
5ORF C531664..31987 [-], 324hypothetical protein
6ORF C632019..33395 [-], 1377putative pyridine nucleotide-disulfide oxidoreductase, class I
7ORF C733438..34244 [-], 807conserved hypothetical membrane protein
8dsbG34335..35108 [-], 774putative thiol:disulfide interchange protein
9ORF C935111..35947 [-], 837putative thiol:disulfide interchange protein
10dsbD35947..37800 [-], 1854putative thiol:disulfide interchange protein
11cycH37883..38764 [-], 882putative cytochrome c-type biogenesis protein CycH
12cycL38761..39216 [-], 456putative cytochrome c-type biogenesis protein CycL precursor
13ccmG39213..39737 [-], 525putative cytochrome C biogenesis protein CcmG
14ccmF39734..41695 [-], 1962putative cytochrome C-type biogenesis protein CcmF
15cycJ / ccmE41699..42145 [-], 447putative cytochrome C-type biogenesis protein CycJ
16ccmD42129..42320 [-], 192putative heme exporter protein D
17ccmC42317..43054 [-], 738putative heme exporter protein C
18ccmB43067..43753 [-], 687putative cytochrome c maturation protein B
19ccmA43750..44361 [-], 612putative heme exporter protein A
20armR44542..45210 [+], 669putative response-regulator ArmR
21armS45207..46592 [+], 1386putative sensor-kinase ArmS
22cutE46746..48344 [-], 1599putative apolipoprotein N-acyltransferase
23ORF C2248369..50684 [-], 2316putative metal transporter ATPase
24ORF C2350608..51705 [-], 1098putative cytochrome c
25ORF C2451689..52507 [-], 819putative cytochrome c4
26fixO/ccoO52504..53145 [-], 642putative cytochrome-c oxidase
27fixN/ccoN53142..54698 [-], 1557putative cytochrome-c oxidase
28ORF C2755217..56887 [-], 1671conserved hypothetical protein
29ORF C2856936..57895 [-], 960conserved hypothetical protein
30ORF C2958002..58529 [-], 528conserved hypothetical protein
31ORF C3058552..58863 [-], 312putative transcriptional activator
32ORF C3159013..60239 [+], 1227similar to metabolite transport protein
33ORF C3260316..60693 [+], 378conserved hypothetical protein
34ORF C3360804..61175 [+], 372hypothetical protein
35fenO61235..62029 [-], 795putative enoyl-CoA hydratase/isomerase
36ORF C3562441..63436 [+], 996putative transcriptional regulator
37ORF C3663484..65376 [-], 1893conserved hypothetical proteinRelaxase, MOBH Family
38ORF C3765692..66318 [+], 627conserved hypothetical protein
39ORF C3866331..66963 [+], 633conserved hypothetical protein
40ORF C3967037..67396 [+], 360conserved hypothetical protein
41ORF C4067412..68959 [-], 1548hypothetical proteinTfc19, T4SS component 
42ORF C4168975..69331 [-], 357hypothetical protein
43ORF C4269328..70722 [-], 1395hypothetical proteinTfc22, T4SS component 
44ORF C4370732..71682 [-], 951hypothetical proteinTfc23, T4SS component 
45ORF C4471679..72125 [-], 447hypothetical proteinTfc24, T4SS component 
46radC72290..72784 [-], 495putative DNA repair protein RadC
47ORF C4672960..73724 [-], 765conserved hypothetical protein
48ORF C4773749..76580 [-], 2832hypothetical proteinTfc16, T4SS component 
49ORF C4876641..77081 [-], 441hypothetical proteinTfc15, T4SS component 
50ORF C4977062..78480 [-], 1419hypothetical proteinTfc14, T4SS component 
51ORF C5078470..79381 [-], 912hypothetical proteinTfc13, T4SS component 
52ORF C5179378..80070 [-], 693hypothetical proteinTfc12, T4SS component 
53ORF C5280067..80465 [-], 399hypothetical proteinTfc11, T4SS component 
54ORF C5380478..80837 [-], 360hypothetical proteinTfc10, T4SS component 
55ORF C5480854..81087 [-], 234hypothetical protein
56ORF C5581084..81467 [-], 384hypothetical proteinTfc9, T4SS component 
57ORF C5681671..82141 [+], 471putative excisionase
58ORF C5782138..82713 [+], 576conserved hypothetical protein
59ORF C5882731..83645 [+], 915conserved hypothetical protein
60ORF C5983642..84112 [+], 471hypothetical protein
61ORF C6084109..84609 [+], 501hypothetical protein
62ORF C6184609..85511 [+], 903hypothetical protein
63ORF C6285316..86275 [+], 960hypothetical protein
64ORF C6386285..88909 [+], 2625hypothetical protein
65ORF C6488950..89699 [-], 750hypothetical proteinTfc8, T4SS component 
66ORF C6589696..91885 [-], 2190conserved hypothetical proteinTfc6, T4SS component 
67ORF C6691890..92438 [-], 549hypothetical proteinTfc5, T4SS component 
68ORF C6792435..93025 [-], 591conserved hypothetical proteinTfc4, T4SS component 
69ORF C6893007..93744 [-], 738hypothetical proteinTfc3, T4SS component 
70ORF C6993757..94401 [-], 645hypothetical proteinTfc2, T4SS component 
71ORF C7094398..94997 [-], 600conserved hypothetical proteinTfc2, T4SS component 
72ORF C7195136..97415 [-], 2280conserved hypothetical plasmid protein
73ORF C7297552..97857 [-], 306hypothetical protein
74ORF C7397947..98267 [-], 321hypothetical protein
75ORF C7498318..99427 [-], 1110conserved hypothetical plasmid protein
76ORF C7599492..100139 [-], 648hypothetical protein
77ORF C76100216..100476 [-], 261conserved hypothetical protein
78ORF C77100493..100900 [-], 408conserved hypothetical protein
79ORF C78101005..101346 [-], 342conserved hypothetical plasmid protein
80ORF C79101441..102130 [-], 690conserved hypothetical protein
81ORF C80102225..103052 [-], 828conserved hypothetical protein; associated with oriT region on plasmids
82ORF C81103198..104196 [-], 999conserved hypothetical protein
83ORF C82104414..104698 [-], 285conserved hypothetical protein
84ORF C83105006..105266 [-], 261conserved hypothetical protein
85merA106352..108040 [-], 1689mercuric (Hg(II)) reductase
86merP108051..108338 [-], 288periplasmic mercuric ion binding protein MerP
87merT108351..108701 [-], 351mercuric transport protein MerT
88merR108773..109180 [+], 408organomercurial resistance regulatory protein MerR
89ORF C89109442..110266 [-], 825hypothetical protein
90ORF C90110555..110833 [-], 279hypothetical protein
91ORF C91110931..111668 [-], 738hypothetical protein
92ORF C92111752..112489 [-], 738hypothetical protein
93ORF C93112621..113013 [-], 393conserved hypothetical protein
94ORF C94113035..113448 [-], 414conserved hypothetical protein
95ORF C95113585..113896 [-], 312conserved hypothetical protein
96lspA114233..114733 [-], 501putative lipoprotein signal peptidase LspA
97ORF C97114737..117649 [-], 2913putative metal-transporting P-type ATPase
98ORF C98117741..118139 [+], 399putative transcriptional regulator
99ORF C99118594..118830 [-], 237hypothetical protein
100ORF C100119215..119850 [+], 636putative integral membrane protein / transporter
101topB120574..122604 [-], 2031putative DNA topoisomerase III
102ssb122888..123328 [-], 441putative single-stranded DNA binding protein
103ORF C103123402..123929 [-], 528conserved hypothetical protein
104ORF C104123926..124717 [-], 792conserved hypothetical protein
105ORF C105125147..126385 [-], 1239conserved hypothetical protein
106ORF C106126389..126949 [-], 561conserved hypothetical protein
107ORF C107126964..128643 [-], 1680conserved hypothetical protein
108soj128889..129764 [-], 876putative chromosome partitioning related protein
109ORF C109129807..130028 [-], 222phage-related protein
110ORF C110130138..130884 [-], 747conserved hypothetical protein
111ORF C111131335..131835 [+], 501hypothetical protein
112rebB1132450..132770 [-], 321putative protein associated with synthesis and assembly of refractile inclusion bodies
113rebB2132833..133153 [-], 321putative protein associated with synthesis and assembly of refractile inclusion bodies
114ORF C/SG114133304..133849 [-], 546hypothetical protein
115ORF C/SG115133903..134142 [-], 240hypothetical protein
116ORF C/SG116134371..136512 [-], 2142hypothetical protein
117ORF C/SG117136563..137189 [-], 627hypothetical protein
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins111Fasta
(1) Larbig KD; Christmann A; Johann A; Klockgether J; Hartsch T; Merkl R; Wiehlmann L; Fritz HJ; Tummler B (2002). Gene islands integrated into tRNA(Gly) genes confer genome diversity on a Pseudomonas aeruginosa clone. J Bacteriol. 184(23):6665-80. [PudMed:12426355] experimental
 
experimental experimental literature