ICEberg
I. Information of ICE
ICEberg ID165
Name ICE6094 This ICE is derived from experimental literature
FamilyTn5253
OrganismStreptococcus pneumoniae Pn19
Size (bp)61030
GC content [Genome] (%)33.18
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceFR670347 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..61030 
Putative oriT region -
Putative relaxase coordinates: 12860..14569;   Family:  MOBP


II. ICE interaction with IME/CIME/

The interaction information of ICE6094 is not available.



The graph information of ICE6094 components from FR670347
Complete gene list of ICE6094 from FR670347
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1-1..1188 [-], 1188integrase
2-1160..1429 [-], 270hypothetical protein
3-1736..2023 [-], 288hypothetical protein
4-3477..4658 [-], 1182hypothetical protein
5-5609..7009 [-], 1401hypothetical protein
6-7030..8805 [-], 1776hypothetical protein
7-8915..9433 [-], 519hypothetical protein
8-11503..12303 [+], 801hypothetical protein
9-12860..14569 [-], 1710putative relaxaseRelaxase, MOBP Family
10-14669..15034 [-], 366hypothetical protein
11-15039..15395 [-], 357hypothetical protein
12-15758..16933 [+], 1176hypothetical protein
13-17019..18836 [-], 1818ATP-dependent DNA helicase (UvrD)
14-18823..20892 [-], 2070DNA helicase associated protein
15-21565..22794 [+], 1230hypothetical protein
16-22791..23363 [-], 573hypothetical protein
17-23457..24353 [+], 897hypothetical proteinIntegrase 
18-25374..25838 [-], 465hypothetical protein
19-26126..26602 [-], 477hypothetical protein
20-26878..27522 [-], 645hypothetical protein
21-27601..28200 [-], 600hypothetical protein
22-28623..29558 [+], 936replication protein
23-30423..31073 [-], 651chloramphenicol acetyltransferaseAR 
24-31245..31493 [-], 249hypothetical protein
25-31732..32520 [-], 789hypothetical protein
26-32996..33754 [-], 759zeta toxin
27-33754..34230 [-], 477putative transcriptional regulator
28-34298..34570 [-], 273hypothetical protein
29-34608..34991 [-], 384hypothetical protein
30-34988..35221 [-], 234hypothetical protein
31-35272..36357 [-], 1086hypothetical protein
32-36367..37008 [-], 642hypothetical proteinPrgL, T4SS component 
33-38024..44248 [-], 6225SNF2 family protein
34-44296..44706 [-], 411hypothetical protein
35-45333..45941 [+], 609hypothetical protein
36-45976..48789 [-], 2814putative conjugal transfer proteinPrgK, T4SS component 
37-48801..51158 [-], 2358putative conjugal transfer proteinPrgJ, T4SS component 
38-51109..51468 [-], 360hypothetical protein
39-51522..52376 [-], 855hypothetical proteinPrgH, T4SS component 
40-52656..54536 [-], 1881TraG/TraD family proteinT4CP 
41-54533..55021 [-], 489hypothetical protein
42-55011..55310 [-], 300hypothetical protein
43-55593..56429 [-], 837hypothetical protein
44-56429..57019 [-], 591hypothetical protein
45-57150..57737 [-], 588hypothetical protein
46-57740..57973 [-], 234hypothetical protein
47-57986..58366 [-], 381hypothetical protein
48-58359..58808 [-], 450hypothetical protein
49-58792..60150 [-], 1359C-5-cytosine-specific DNA methylase
50-60251..61030 [-], 780putative replication protein A (RepA)
 
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer
virulence  Gene may be involved in adaptative function

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins50Fasta
(1) Mingoia M; Tili E; Manso E; Varaldo PE; Montanari MP (2011). Heterogeneity of Tn5253-like composite elements in clinical Streptococcus pneumoniae isolates. Antimicrob Agents Chemother. 55(4):1453-9. [PudMed:21263055] experimental
 
experimental experimental literature