ICEberg
I. Information of ICE
ICEberg ID162
Name pNEM316-1 (island VIII) This is a predicted ICE derived from literature
FamilyTnGBS1
OrganismStreptococcus agalactiae NEM316
Size (bp)47070
GC content [Genome] (%)37.66[35.63]
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceNC_004368 (complete ICE sequence in this genome)
Replicon chromosome (2211485 bp, BioProject:334) [NC_004368]
Genome coordinates1013025..1060094 
Putative oriT region -
Putative relaxase coordinates: 1045921..1048287; Locus tag: gbs0995;  Family:  MOBL


II. ICE interaction with IME/CIME/

The interaction information of pNEM316-1 (island VIII) is not available.



The graph information of pNEM316-1 (island VIII) components from NC_004368
Complete gene list of pNEM316-1 (island VIII) from NC_004368
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1xerS1008358..1009428 [-], 1071site-specific tyrosine recombinase XerS
2gbs09661009881..1011476 [+], 1596hypothetical protein
3gbs09671011509..1012282 [-], 774hypothetical protein
4gbs09681012272..1012958 [-], 687satD protein
5gbs09691013361..1014689 [-], 1329hypothetical proteinIntegrase 
6gbs09701014823..1015134 [-], 312hypothetical protein
7gbs09711015139..1015522 [-], 384hypothetical protein
8gbs09721015535..1015813 [-], 279hypothetical protein
9gbs09731015810..1016628 [-], 819hypothetical protein
10gbs09741016767..1017351 [-], 585hypothetical protein
11gbs09751017365..1018702 [-], 1338hypothetical protein
12gbs09761018716..1018973 [-], 258hypothetical protein
13gbs09771018993..1020942 [-], 1950hypothetical protein
14gbs09781020952..1021599 [-], 648hypothetical protein
15gbs09791021599..1021904 [-], 306hypothetical protein
16gbs09801022135..1022368 [-], 234hypothetical protein
17gbs09811022425..1024632 [-], 2208hypothetical protein
18gbs09821024752..1025234 [-], 483hypothetical protein
19gbs09831025334..1028483 [-], 3150hypothetical proteinT4CP 
20gbs09841028476..1028733 [-], 258hypothetical protein
21gbs09851028961..1029392 [-], 432hypothetical protein
22gbs09861029564..1032365 [-], 2802hypothetical proteinPrgB, T4SS component 
23gbs09871032417..1033139 [-], 723hypothetical proteinPrgC, T4SS component 
24gbs09881033216..1035477 [-], 2262hypothetical proteinPrgA, T4SS component 
25gbs09891035492..1036574 [-], 1083hypothetical protein
26gbs09901036585..1036932 [-], 348hypothetical protein
27gbs09911037024..1038943 [-], 1920hypothetical protein
28gbs09921038858..1040606 [-], 1749hypothetical protein
29gbs09931040789..1045519 [-], 4731hypothetical protein
30gbs09941045538..1045795 [-], 258hypothetical protein
31gbs09951045921..1048287 [-], 2367hypothetical proteinRelaxase, MOBL Family
32gbs09961048341..1048799 [-], 459hypothetical protein
33gbs09971048816..1049616 [-], 801hypothetical protein
34gbs09981049616..1049963 [-], 348hypothetical protein
35gbs09991049956..1050273 [-], 318hypothetical protein
36gbs10001050667..1050942 [-], 276hypothetical protein
37gbs10011051065..1051907 [-], 843hypothetical protein
38gbs10021051969..1052973 [-], 1005hypothetical protein
39gbs10031053052..1054008 [+], 957hypothetical protein
40gbs10041054001..1054249 [-], 249hypothetical protein
41gbs10051054264..1054407 [-], 144hypothetical protein
42gbs10061054585..1054995 [-], 411hypothetical protein
43gbs10071054988..1055437 [-], 450hypothetical protein
44gbs10081055627..1056073 [-], 447hypothetical protein
45gbs10091056073..1056501 [-], 429hypothetical protein
46gbs03681056513..1056716 [-], 204hypothetical protein
47gbs10101056972..1058465 [-], 1494hypothetical protein
48gbs10111058478..1058705 [-], 228hypothetical protein
49gbs10121058698..1058817 [-], 120hypothetical protein
50gbs10131058823..1058915 [-], 93hypothetical protein
51gbs10141058921..1059250 [-], 330hypothetical protein
52gbs10151059261..1059755 [-], 495hypothetical protein
53gbs10161059792..1059980 [-], 189hypothetical protein
54gbs10171060102..1061667 [-], 1566hypothetical protein
55gbs10181061685..1062017 [-], 333DNA-binding protein
56gbs10191062106..1063419 [-], 1314sensor histidine kinase CiaH
57gbs10201063403..1064083 [-], 681DNA-binding response regulator CiaR
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins49Fasta
(1) Brochet M; Da Cunha V; Couve E; Rusniok C; Trieu-Cuot P; Glaser P (2009). Atypical association of DDE transposition with conjugation specifies a new family of mobile elements. Mol Microbiol. 71(4):948-59. [PudMed:19183283] experimental
 
experimental experimental literature