ICEberg
I. Information of ICE
ICEberg ID158
Name pSE222 {AICE} This is a predicted ICE derived from literature
FamilyUnclassified
OrganismSaccharopolyspora erythraea NRRL 2338
Size (bp)20426
GC content [Genome] (%)66.33[71.15]
Insertion sitetRNA-Ala(SACE_8019)
Function-
Species that ICE can be transferred to-
Nucleotide SequenceAM420293 (complete ICE sequence in this genome)
Replicon chromosome (8212805 bp, BioProject:18489) [NC_009142]
Genome coordinates1245945..1266370 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of pSE222 {AICE} is not available.



The graph information of pSE222 {AICE} components from AM420293
Complete gene list of pSE222 {AICE} from AM420293
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1SACE_11171241115..1242272 [+], 1158MFS superfamily, multidrug transport protein
2SACE_11181242850..1243089 [+], 240hypothetical protein
3SACE_11191243082..1244419 [+], 1338NADH dehydrogenase
4paaK-21244426..1245748 [-], 1323phenylacetate-coenzyme A ligase
5SACE_11211246070..1247272 [-], 1203phage integraseIntegrase 
6SACE_11221247329..1248378 [-], 1050DNA repair protein RadA domain protein
7SACE_11231248383..1249129 [-], 747C-5 cytosine-specific DNA methylase
8SACE_11241249126..1250070 [-], 945hypothetical proteinReplication protein 
9ssb1250153..1250578 [-], 426putative single-strand DNA-binding protein
10SACE_11261250604..1251008 [-], 405hypothetical protein
11SACE_11271251033..1251209 [-], 177hypothetical protein
12SACE_11281251238..1252122 [-], 885hypothetical protein
13SACE_11291252362..1254686 [-], 2325hypothetical proteinT4SS 
14SACE_11301254782..1256032 [-], 1251hypothetical protein
15SACE_11311256029..1256241 [-], 213hypothetical protein
16SACE_11321256238..1256573 [-], 336hypothetical protein
17SACE_11331256663..1257136 [-], 474DNA hydrolase with MutT domain
18SACE_11341257238..1257498 [-], 261hypothetical protein
19SACE_11351257544..1257804 [-], 261hypothetical protein
20SACE_11361257857..1258282 [-], 426hypothetical protein
21SACE_11371258282..1258665 [-], 384hypothetical protein
22SACE_11381258755..1258976 [-], 222hypothetical protein
23SACE_11391259039..1259548 [+], 510hypothetical protein
24SACE_11401259555..1259755 [-], 201hypothetical protein
25SACE_11411259909..1261108 [+], 1200transcriptional regulator, XRE family
26SACE_11421261162..1261635 [+], 474flavoprotein
27SACE_11461266582..1267397 [-], 816alpha/beta hydrolase fold
28SACE_11471267492..1268466 [+], 975AraC-family transcriptional regulator
29SACE_11481268836..1269588 [+], 753hypothetical protein
30SACE_11491269961..1271256 [+], 1296putative sensor-like histidine kinase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins22Fasta
(1) te Poele EM; Samborskyy M; Oliynyk M; Leadlay PF; Bolhuis H; Dijkhuizen L (2008). Actinomycete integrative and conjugative pMEA-like elements of Amycolatopsis and Saccharopolyspora decoded. Plasmid. 59(3):202-16. [PudMed:18295883] in_silico
 
in_silico in silico analysis literature