ICEberg
I. Information of ICE
ICEberg ID152
Name CTn9343 This ICE is derived from experimental literature
FamilyUnclassified
OrganismBacteroides fragilis NCTC 9343
Size (bp)77120
GC content [Genome] (%)45.44[43.19]
Insertion site-
Function-
Species that ICE can be transferred toBacteroides fragilis
Nucleotide SequenceCR626927 (complete ICE sequence in this genome)
Replicon chromosome (5205140 bp, BioProject:46) [NC_003228]
Genome coordinates1727162..1804281 
Putative oriT region -
Putative relaxase -


II. ICE interaction with IME/CIME/

The interaction information of CTn9343 is not available.



The graph information of CTn9343 components from CR626927
Complete gene list of CTn9343 from CR626927
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)
*Reannotation 
1BF14531722990..1724687 [-], 1698putative transmembrane protein
2BF14541724840..1725808 [+], 969putative transmembrane protein
3BF14551726098..1727007 [-], 910conserved hypothetical protein (pseudogene)
4BF14571727125..1729476 [+], 2352putative type I restriction enzyme
5BF14581729479..1730999 [+], 1521putative type I RM modification enzyme
6BF14591731015..1732031 [+], 1017putative DNA-binding protein
7BF14601732024..1732470 [+], 447hypothetical protein
8BF14611732497..1733840 [+], 1344putative type I restriction enzyme specificity protein
9BF14621733797..1734171 [+], 375putative transposase
10BF14621733797..1734168 [+], 372putative transposase (fragment)
11BF14621734232..1734549 [+], 318hypothetical protein
12BF14641734607..1734708 [+], 102hypothetical protein
13BF14651734787..1734960 [+], 174hypothetical protein
14BF14661734971..1735108 [+], 138hypothetical protein
15BF14671735345..1735842 [+], 498conserved hypothetical protein
16BF14681735881..1736990 [+], 1110putative bacteriophage-related replication protein
17BF14691737010..1737567 [+], 558putative transmembrane protein
18BF14701737593..1738504 [+], 912putative DNA primase
19BF14711738565..1739293 [+], 729conserved hypothetical protein
20BF14731739425..1740057 [+], 633hypothetical protein
21BF14741740065..1740412 [+], 348hypothetical protein
22BF14751740409..1740696 [+], 288hypothetical protein
23BF14761740689..1740961 [+], 273hypothetical protein
24BF14771741042..1741221 [+], 180hypothetical protein
25BF14781741263..1741781 [+], 519hypothetical protein
26BF14791741992..1742285 [+], 294conserved hypothetical protein
27BF14801742282..1742824 [+], 543conserved hypothetical protein
28BF14811742836..1744899 [+], 2064conserved hypothetical protein
29BF14821744886..1745767 [+], 882hypothetical protein
30BF14831745785..1746747 [+], 963hypothetical protein
31BF14841746798..1748402 [+], 1605hypothetical protein
32BF14851748421..1749218 [+], 798hypothetical protein
33BF14861749233..1749541 [+], 309putative transmembrane protein
34BF14871749538..1749879 [+], 342putative transmembrane protein
35BF14881749908..1752268 [+], 2361putative conserved protein found in conjugate transposon
36BF14891752281..1752802 [+], 522putative conserved TraI-like protein found in conjugate transposonVirB5, T4SS component 
37BF14901752859..1753581 [+], 723putative transmembrane protein
38BF14911753601..1754242 [+], 642putative transmembrane protein
39BF14921754239..1755219 [+], 981conserved hypothetical TraM-like protein found in conjugate transposon
40BF14931755413..1755556 [+], 144hypothetical protein
41BF14941755676..1756212 [-], 537putative transmembrane protein
42BF14951756227..1757381 [+], 1155conserved hypothetical TraN-like protein found in conjugate transposon
43BF14961757378..1757929 [+], 552putative peptidase
44BF14971757913..1758254 [+], 342hypothetical protein
45BF14981758251..1758559 [+], 309putative DNA-binding protein
46BF14991758574..1760157 [+], 1584hypothetical protein
47BF15001760393..1762303 [-], 1911hypothetical protein
48BF15011762307..1762585 [-], 279hypothetical protein
49BF15021762601..1763398 [-], 798putative protein involved in partitioning
50BF15031763896..1764138 [+], 243hypothetical protein
51BF15041764221..1765069 [+], 849conserved hypothetical protein
52BF15051765180..1765341 [+], 162hypothetical protein
53BF15061765459..1765644 [-], 186hypothetical protein
54BF15071765682..1765825 [+], 144hypothetical protein
55cbh1766098..1767093 [+], 996putative choloylglycine hydrolase
56BF15091767406..1767795 [-], 390hypothetical protein
57BF15101768167..1769735 [-], 1569conserved hypothetical exported protein
58BF15111769824..1771461 [-], 1638putative outer membrane protein
59BF15121771472..1774855 [-], 3384putative outer membrane protein
60BF15131774999..1775955 [-], 957putative anti-sigma factor
61BF15141776039..1776626 [-], 588putative RNA polymerase ECF-type sigma factor
62BF15161777187..1777591 [+], 405hypothetical protein
63BF15171777597..1778913 [+], 1317conserved hypothetical protein
64BF15181779001..1782666 [+], 3666hypothetical protein
65BF15191782677..1783030 [+], 354hypothetical protein
66mobC1783122..1784726 [+], 1605mobilisation protein CT4CP 
67mobB1784743..1785693 [-], 951mobilisation protein B
68mobA1785683..1786225 [-], 543mobilisation protein A
69BF15231786511..1786861 [-], 351hypothetical protein
70BF15241786839..1787783 [+], 945conserved hypothetical protein
71BF15251787780..1788025 [+], 246hypothetical protein
72BF15261788291..1788521 [+], 231hypothetical protein
73BF15271788588..1789295 [+], 708putative cation efflux protein
74satG1789308..1789925 [+], 618putative acetyltransferase
75rteA1789931..1791202 [+], 1272putative two component system sensor kinase
76rteB1791195..1792517 [+], 1323putative two-component system response regulator
77BF15311792700..1793365 [-], 666hypothetical protein
78BF15321793365..1794351 [-], 987conserved hypothetical protein
79BF15331794681..1795403 [-], 723putative integrase
80tnpA1795457..1797103 [+], 1647putative transposase for insertion sequence element IS21-like
81tnpB1797072..1797863 [+], 792insertion sequence IS21-like putative ATP-binding protein
82BF15361797901..1798302 [+], 402hypothetical protein
83BF15371798285..1799658 [-], 1374putative type I restriction-modification specificity protein
84BF15381799717..1800523 [+], 807putative phage integrase/recombinaseIntegrase 
85BF15391800648..1800782 [+], 135hypothetical protein
86BF15401800966..1801529 [-], 564hypothetical protein
87BF15411801548..1802183 [-], 636hypothetical protein
88BF15421802180..1803445 [-], 1266hypothetical protein
89BF15431803501..1803707 [-], 207hypothetical protein
90BF15441803918..1804280 [-], 363hypothetical protein
91BF15451804751..1805701 [-], 951conserved hypothetical protein
92BF15461805817..1806164 [-], 348conserved hypothetical protein
93BF15471806235..1806465 [-], 231hypothetical protein
94BF15481806470..1806613 [+], 144hypothetical protein
95upfY1807211..1807810 [+], 600putative transcriptional regulator
96upfZ1807822..1808304 [+], 483putative transcriptional regulator
97rmlA11808337..1809227 [+], 891putative glucose-1-phosphate thymidyl transferase
 
flank Flanking regions
integrase Gene may contribute to site-specific recombination
conjugation Gene may play role in conjugative transfer

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins85Fasta
(1) Franco AA (2004). The Bacteroides fragilis pathogenicity island is contained in a putative novel conjugative transposon. J Bacteriol. 186(18):6077-92. [PudMed:15342577] experimental
 
experimental experimental literature